Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 6.4e-213 743.8 375 100.0
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 3.7e-184 648.3 446 76.9
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 2.9e-173 612.1 422 76.5
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.7e-168 596.3 444 69.1
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.7e-168 596.3 445 69.9
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.2e-168 595.9 445 70.1
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.8e-168 595.5 444 69.8
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.4e-167 592.4 444 68.7
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 6.1e-163 577.8 445 68.8
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-161 572.8 445 68.3
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.5e-156 556.6 456 65.8
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.2e-154 548.1 436 66.3
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.3e-153 545.4 461 64.2
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 4.2e-148 528.5 443 63.7
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 3.6e-147 525.4 448 62.5
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.8e-146 523.1 454 62.3
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 1.8e-146 523.1 450 62.4
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 5.2e-146 521.5 459 61.4
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 1.2e-145 520.4 453 61.4
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.4e-145 518.5 455 62.2
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 5.7e-145 518.1 451 61.4
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.3e-144 516.9 455 62.0
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.2e-144 516.2 456 62.5
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 3.1e-143 512.3 447 60.6
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 9.1e-143 510.8 454 61.2
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 1.2e-142 510.4 452 61.1
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 5.9e-142 508.1 452 61.5
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 6.6e-141 504.6 454 60.8
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 1.9e-140 503.1 443 60.0
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 3.3e-140 502.3 450 61.3
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 7.2e-140 501.1 442 62.4
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 7.2e-140 501.1 444 60.8
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 3.6e-139 498.8 441 59.9
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 3.0e-138 495.7 466 59.0
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 3.0e-138 495.7 466 59.0
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 5.2e-138 495.0 445 58.9
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 1.5e-137 493.4 448 59.2
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 1.7e-136 490.0 446 59.4
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 2.8e-136 489.2 441 58.0
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 1.8e-135 486.5 457 59.1
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 4.1e-135 485.3 449 61.0
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 9.2e-135 484.2 441 57.8
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.2e-134 483.8 436 59.9
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 4.5e-134 481.9 451 57.6
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 4.5e-134 481.9 452 59.1
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.3e-133 480.3 445 58.7
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 1.7e-133 479.9 429 61.8
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.5e-132 476.9 439 58.8
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 4.3e-132 475.3 447 58.2
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 9.5e-132 474.2 423 60.0
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 2.1e-131 473.0 450 56.4
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.1e-130 469.2 452 57.1
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 5.2e-130 468.4 453 55.4
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 6.8e-130 468.0 425 60.0
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 1.2e-129 467.2 438 59.1
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 7.5e-129 464.5 447 55.9
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 9.8e-129 464.2 425 59.3
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 1.3e-128 463.8 506 53.6
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.9e-127 459.9 441 56.2
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 5.4e-127 458.4 440 55.5
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 7.0e-127 458.0 453 56.5
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 6.0e-126 454.9 431 56.4
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.3e-125 453.8 431 56.8
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 3.0e-125 452.6 437 56.1
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 5.0e-125 451.8 431 55.9
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 4.3e-124 448.7 442 57.0
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 9.5e-124 447.6 434 56.0
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 2.8e-123 446.0 431 55.7
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.1e-122 444.1 438 55.9
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 2.3e-122 443.0 431 56.1
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 4.0e-122 442.2 434 56.0
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 5.2e-122 441.8 434 56.2
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 1.5e-121 440.3 431 55.5
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 1.5e-121 440.3 457 54.7
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 7.5e-121 438.0 434 56.0
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 3.7e-120 435.6 433 55.0
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 1.1e-119 434.1 439 56.3
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 3.5e-118 429.1 405 57.0
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 2.3e-117 426.4 442 54.1
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 6.2e-115 418.3 444 53.6
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.1e-114 417.5 460 53.0
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 3.1e-114 416.0 446 53.1
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.2e-113 414.1 440 53.6
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 1.2e-113 414.1 453 51.7
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 9.9e-113 411.0 532 46.1
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.2e-110 404.1 398 56.8
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.1e-110 403.3 460 50.9
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 2.7e-110 402.9 412 56.8
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 1.8e-106 390.2 433 53.1
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 8.9e-106 387.9 382 58.6
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 2.1e-102 376.7 417 51.6
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 3.9e-101 372.5 436 49.1
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.9e-100 370.2 417 50.4
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 7.3e-100 368.2 455 46.6
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.8e-98 363.6 446 49.3
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 2.1e-94 350.1 352 54.0
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 2.7e-94 349.7 454 45.6
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 3.6e-91 339.3 371 56.1
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.9e-88 329.7 353 51.8
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 4.2e-87 325.9 273 61.9
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.8e-85 320.5 267 61.4
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 4.8e-83 312.4 330 51.8
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 1.1e-82 311.2 435 40.5
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.4e-82 310.1 403 44.9
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 2.2e-80 303.5 424 42.9
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 6.5e-80 302.0 252 61.1
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 2.5e-76 290.0 333 49.5
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 9.6e-76 288.1 247 59.1
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.0e-74 282.7 165 81.2
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 7.6e-73 278.5 169 76.9
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 1.4e-71 274.2 409 41.3
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 1.1e-68 264.6 263 56.3
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.4e-66 257.7 329 48.9
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 9.0e-66 255.0 480 35.4
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 7.2e-63 245.4 213 60.1
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 5.1e-61 239.2 209 61.2
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.0e-60 237.3 320 47.2
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 3.9e-53 213.0 235 56.2
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 3.1e-50 203.4 203 57.6
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.5e-49 201.1 138 65.2
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 2.3e-45 187.2 168 59.5
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 4.0e-45 186.4 222 51.4
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 5.2e-45 186.0 214 50.5
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 1.2e-38 164.9 92 83.7
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 1.2e-36 158.3 400 29.8
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 3.4e-36 156.8 217 45.6
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 3.7e-35 153.3 87 80.5
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 7.7e-33 145.6 79 83.5
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 1.8e-29 134.4 297 31.6
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 8.8e-29 132.1 87 67.8
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 3.3e-23 113.6 150 40.7
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 3.0e-21 107.1 67 76.1
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 6.8e-21 105.9 50 96.0
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 5.7e-20 102.8 92 60.9
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 2.2e-19 100.9 69 76.8
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 5.4e-18 96.3 150 36.0
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 3.3e-15 87.0 84 59.5
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 9.5e-15 85.5 59 64.4
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.7e-14 83.2 59 69.5
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.7e-11 73.6 122 37.7
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.7e-11 73.6 122 37.7
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.2e-10 70.5 60 66.7
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.3e-08 64.3 33 84.8
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 8.6e-08 62.4 46 67.4
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 1.9e-07 61.2 114 38.6
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 3.3e-07 60.5 44 63.6
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 9.5e-07 58.9 36 77.8


User provided reference genes

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