Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 8.7e-245 850.1 514 100.0
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 5.7e-228 794.3 513 92.6
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 5.3e-226 787.7 514 90.3
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 3.4e-225 785.0 514 90.7
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 4.5e-225 784.6 514 91.1
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 7.7e-225 783.9 514 90.3
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 7.7e-225 783.9 514 90.3
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.0e-224 783.5 514 90.7
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 8.5e-224 780.4 514 89.1
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.5e-223 778.9 514 90.1
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 4.2e-223 778.1 514 84.8
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 9.4e-223 776.9 512 91.0
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 9.4e-223 776.9 514 89.9
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.2e-222 776.5 514 90.3
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 2.7e-222 775.4 514 92.0
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 3.6e-222 775.0 513 89.9
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 1.8e-221 772.7 514 89.5
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.3e-221 772.3 514 89.1
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 2.3e-221 772.3 512 88.7
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 3.0e-221 771.9 514 84.6
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 3.0e-221 771.9 514 90.5
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 3.9e-221 771.5 509 84.5
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 5.1e-221 771.2 514 88.1
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 8.8e-221 770.4 511 90.4
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 3.3e-220 768.5 511 84.9
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 4.4e-220 768.1 510 86.1
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 4.4e-220 768.1 510 89.0
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 4.4e-220 768.1 511 88.5
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 5.7e-220 767.7 512 89.8
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 7.4e-220 767.3 514 87.9
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 7.4e-220 767.3 511 88.5
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 7.4e-220 767.3 510 85.5
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 7.4e-220 767.3 504 90.3
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 9.7e-220 766.9 514 87.9
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 1.3e-219 766.5 510 85.1
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.7e-219 766.1 514 89.3
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.7e-219 766.1 514 88.1
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 2.8e-219 765.4 514 89.5
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 3.7e-219 765.0 513 88.9
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 3.7e-219 765.0 514 84.2
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 4.8e-219 764.6 514 87.4
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 4.8e-219 764.6 514 88.1
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 8.2e-219 763.8 513 88.5
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 8.2e-219 763.8 514 88.9
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 1.1e-218 763.5 512 89.1
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 1.1e-218 763.5 513 89.5
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.8e-218 762.7 514 88.7
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.8e-218 762.7 512 89.1
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 2.4e-218 762.3 510 88.6
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 2.4e-218 762.3 514 89.3
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 3.1e-218 761.9 514 89.3
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.5e-217 759.6 514 87.7
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 5.9e-217 757.7 512 90.2
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.0e-216 756.9 514 82.7
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 1.0e-216 756.9 514 84.0
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 1.3e-216 756.5 511 88.8
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.3e-216 756.5 513 89.5
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 6.5e-216 754.2 511 86.7
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.9e-215 752.7 513 87.1
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 1.9e-215 752.7 513 83.4
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.9e-215 752.7 536 85.3
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 3.2e-215 751.9 527 78.2
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.2e-214 750.0 535 82.1
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.6e-214 749.6 513 86.4
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 2.7e-214 748.8 514 83.1
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 2.7e-214 748.8 514 83.1
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 6.1e-214 747.7 511 82.2
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 6.1e-214 747.7 513 86.2
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 1.8e-213 746.1 515 86.0
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.8e-213 746.1 513 86.0
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 3.9e-213 745.0 514 88.1
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 5.2e-213 744.6 514 87.9
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 5.2e-213 744.6 514 87.9
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 6.7e-213 744.2 514 87.7
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 2.0e-212 742.7 504 88.3
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 4.4e-212 741.5 511 81.4
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 2.2e-211 739.2 511 85.3
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 6.3e-211 737.6 504 85.3
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.1e-210 736.9 504 87.5
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 1.8e-210 736.1 511 80.8
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.8e-210 736.1 509 85.3
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.8e-210 736.1 509 85.3
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 3.1e-210 735.3 542 79.0
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 4.1e-210 734.9 511 84.9
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 4.5e-209 731.5 511 83.4
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 1.1e-207 726.9 507 86.0
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.2e-206 723.4 514 81.5
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 3.6e-206 721.8 514 83.7
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 3.4e-204 715.3 500 83.6
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 1.4e-202 709.9 520 82.3
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 2.0e-201 706.1 511 84.5
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 3.5e-201 705.3 535 79.8
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 3.5e-201 705.3 514 76.3
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.5e-199 699.1 509 85.1
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 5.5e-199 698.0 514 73.0
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.7e-198 694.9 485 86.4
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 1.5e-196 689.9 557 75.9
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.5e-196 689.9 514 81.3
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 5.7e-196 688.0 514 79.0
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 8.3e-195 684.1 551 70.8
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 2.3e-192 676.0 514 79.8
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 3.6e-190 668.7 464 89.9
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 1.8e-189 666.4 525 79.0
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 9.8e-188 660.6 511 72.2
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.1e-186 657.1 468 86.3
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.2e-185 653.7 484 82.4
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.2e-180 637.1 513 80.5
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.6e-174 616.7 435 84.1
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 2.8e-174 615.9 430 88.6
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 6.8e-173 611.3 428 87.4
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 1.7e-160 570.1 511 71.6
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 4.2e-154 548.9 511 68.5
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 2.5e-151 539.7 414 82.4
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 7.3e-143 511.5 277 91.7
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 4.3e-135 485.7 254 94.9
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 2.3e-120 436.8 308 78.9
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 9.0e-117 424.9 393 61.6
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 4.5e-116 422.5 322 79.2
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 6.9e-109 398.7 210 96.2
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 1.5e-108 397.5 210 95.7
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 3.4e-87 326.6 365 70.4
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 7.5e-79 298.9 257 82.5
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 6.8e-72 275.8 517 47.4
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 2.1e-65 254.2 134 97.0
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 5.2e-64 249.6 175 82.9
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.1e-61 241.9 526 35.7
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 3.3e-42 177.2 99 81.8
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.4e-40 171.0 108 75.0
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 4.0e-40 170.2 254 40.2
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 3.2e-37 160.6 80 92.5
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 4.3e-34 150.2 80 92.5
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.6e-33 148.3 137 63.5
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 2.8e-33 147.5 107 73.8
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 3.6e-33 147.1 242 44.6
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.4e-29 134.4 298 30.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 9.3e-29 132.5 70 90.0
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 6.6e-27 126.3 69 87.0
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 5.6e-26 123.2 64 87.5
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 5.6e-26 123.2 64 87.5
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 7.1e-21 106.3 56 83.9
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 6.7e-19 99.8 70 67.1
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 6.7e-19 99.8 70 67.1
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 1.3e-17 95.5 56 73.2
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 1.1e-16 92.4 49 77.6
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.4e-16 91.3 47 97.9
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 1.1e-13 82.4 43 81.4
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.4e-13 82.0 251 27.1
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 2.1e-12 78.2 43 76.7
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 6.0e-12 76.6 134 74.6
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 5.1e-11 73.6 105 43.8
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 1.1e-10 72.4 36 83.3
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 2.0e-07 61.6 35 74.3
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 2.9e-06 57.8 59 52.5
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 8.5e-06 56.2 74 51.4


User provided reference genes

Program Settings