Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 1.5e-145 519.6 287 100.0
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 5.0e-125 451.4 288 87.8
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 9.5e-124 447.2 288 87.5
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.7e-120 436.4 286 84.3
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 7.8e-118 427.6 288 79.9
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 1.3e-117 426.8 288 84.7
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.7e-117 426.4 287 84.7
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.9e-117 425.2 287 84.3
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 5.1e-117 424.9 287 82.6
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 1.1e-116 423.7 288 84.4
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 1.9e-116 422.9 288 81.6
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 5.6e-116 421.4 288 80.9
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.8e-114 416.4 287 82.2
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.3e-114 416.0 288 79.2
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.3e-114 416.0 288 79.2
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 5.2e-114 414.8 288 78.8
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.5e-113 413.3 286 79.0
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.7e-112 409.8 290 78.3
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 2.2e-112 409.5 267 81.3
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.1e-111 407.1 287 77.7
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 1.9e-111 406.4 289 78.5
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 9.2e-111 404.1 280 81.8
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 1.2e-110 403.7 287 78.0
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 4.6e-110 401.7 288 78.8
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.0e-110 401.4 289 78.2
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 6.0e-110 401.4 287 80.1
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.0e-109 400.6 289 78.2
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 1.0e-109 400.6 289 77.5
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.0e-109 399.1 288 77.1
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 6.6e-109 397.9 288 77.1
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 2.1e-107 392.9 289 76.8
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.1e-107 392.9 288 75.7
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 2.8e-107 392.5 288 76.0
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 2.8e-107 392.5 315 73.7
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 4.7e-107 391.7 288 76.4
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 8.1e-107 391.0 285 78.9
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 8.1e-107 391.0 288 77.1
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 8.1e-107 391.0 286 75.5
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 2.4e-106 389.4 288 74.7
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 4.0e-106 388.7 289 76.8
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 5.2e-106 388.3 289 76.1
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 6.8e-106 387.9 289 75.4
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 8.9e-106 387.5 287 75.3
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 2.2e-104 382.9 308 71.8
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 2.2e-104 382.9 288 74.7
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 3.8e-104 382.1 287 74.2
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 4.9e-104 381.7 295 74.9
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 1.4e-103 380.2 287 76.0
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 1.9e-103 379.8 288 74.0
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 3.2e-103 379.0 288 74.3
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 5.4e-103 378.3 305 69.5
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 1.2e-102 377.1 288 74.7
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 2.1e-102 376.3 290 74.5
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 2.7e-102 375.9 287 73.5
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 4.6e-102 375.2 288 73.3
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 1.0e-101 374.0 288 73.3
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 1.7e-101 373.2 288 74.3
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 1.7e-101 373.2 292 73.6
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 5.1e-101 371.7 289 73.7
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 5.1e-101 371.7 287 73.2
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 6.6e-101 371.3 277 76.2
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 6.6e-101 371.3 287 75.3
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 6.6e-101 371.3 287 73.2
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 9.6e-100 367.5 286 72.7
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 1.6e-99 366.7 279 73.8
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 1.6e-99 366.7 287 71.4
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 1.4e-98 363.6 250 77.6
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 2.4e-98 362.8 243 83.1
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 2.4e-98 362.8 243 83.1
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 4.0e-98 362.1 277 74.0
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 4.0e-98 362.1 243 78.6
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 4.0e-98 362.1 287 71.1
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 6.9e-98 361.3 302 67.5
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 9.0e-98 360.9 288 71.5
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 1.2e-97 360.5 243 82.3
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.2e-97 360.5 243 82.3
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.5e-97 360.1 296 70.6
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 2.6e-97 359.4 249 80.3
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 5.8e-97 358.2 289 73.0
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-96 357.1 249 77.1
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 1.3e-96 357.1 249 77.1
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 1.3e-96 357.1 249 79.9
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.3e-96 357.1 267 72.7
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.7e-96 356.7 288 72.6
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 1.7e-96 356.7 249 77.1
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 1.7e-96 356.7 271 73.4
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 3.8e-96 355.5 286 74.8
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 4.9e-96 355.1 249 79.9
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 8.4e-96 354.4 249 76.3
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 8.4e-96 354.4 288 69.1
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 1.1e-95 354.0 249 79.5
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 1.4e-95 353.6 271 73.1
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 3.2e-95 352.4 250 76.0
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 7.1e-95 351.3 249 79.1
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 9.3e-95 350.9 263 73.4
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 4.6e-94 348.6 271 71.2
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 3.9e-93 345.5 241 77.2
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 7.3e-92 341.3 286 68.2
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 1.8e-90 336.7 272 70.2
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 4.0e-90 335.5 275 68.7
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 5.3e-90 335.1 275 68.7
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 1.5e-89 333.6 274 67.2
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.4e-89 332.4 260 72.7
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 6.9e-82 308.1 286 65.0
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.4e-81 305.8 246 71.1
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.4e-80 301.6 263 68.1
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 8.4e-80 301.2 288 61.5
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 2.5e-79 299.7 260 66.9
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 3.2e-79 299.3 278 61.9
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 5.5e-79 298.5 211 79.1
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 6.0e-70 268.5 153 92.8
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 6.0e-70 268.5 291 56.7
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.1e-68 264.2 257 59.9
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 9.7e-68 261.2 153 89.5
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 3.7e-67 259.2 292 56.2
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 2.5e-63 246.5 288 53.1
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 3.9e-61 239.2 231 64.9
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 2.8e-59 233.0 205 67.3
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 9.4e-55 218.0 170 68.8
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 3.0e-53 213.0 265 47.9
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 2.0e-52 210.3 159 64.2
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.8e-51 206.5 187 65.8
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 1.4e-50 204.1 125 84.0
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.0e-48 195.7 153 70.6
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 8.0e-46 188.3 153 66.7
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.3e-43 181.0 170 61.8
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.0e-41 173.7 166 62.0
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.5e-41 172.6 170 58.8
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 2.3e-37 160.2 289 41.9
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.5e-33 146.4 105 71.4
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 5.9e-33 145.6 240 38.8
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 9.4e-31 138.3 137 66.4
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 4.7e-30 136.0 140 59.3
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 6.1e-30 135.6 67 97.0
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.3e-21 107.1 133 54.1
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 8.3e-19 98.6 73 65.8
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 9.2e-18 95.1 105 59.0
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 5.2e-13 79.3 100 53.0
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 1.7e-11 74.3 42 81.0
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.0e-08 65.1 183 31.7
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 3.3e-07 60.1 43 69.8


User provided reference genes

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