Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 6.2e-144 514.2 280 100.0
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.9e-117 425.6 280 83.2
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 9.3e-116 420.6 278 79.9
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 3.7e-80 302.4 280 66.1
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 2.7e-75 286.2 246 66.3
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 5.2e-74 282.0 250 64.8
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 5.7e-73 278.5 254 63.8
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 9.7e-73 277.7 274 59.1
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 1.3e-72 277.3 246 62.2
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 3.7e-72 275.8 293 57.7
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 8.2e-72 274.6 256 62.1
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.4e-71 273.9 280 56.4
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 1.8e-71 273.5 260 61.2
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 2.4e-71 273.1 246 63.8
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 2.4e-71 273.1 250 64.0
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 2.4e-71 273.1 282 58.9
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 3.1e-71 272.7 271 57.2
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 3.1e-71 272.7 275 58.9
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 5.3e-71 271.9 247 61.9
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 7.0e-71 271.6 245 62.0
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 7.0e-71 271.6 279 54.8
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 7.0e-71 271.6 279 54.8
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 7.0e-71 271.6 280 57.9
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 7.0e-71 271.6 260 60.8
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 9.1e-71 271.2 259 59.8
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.2e-70 270.8 279 54.8
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.2e-70 270.8 262 59.2
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 1.2e-70 270.8 291 54.6
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 2.0e-70 270.0 280 55.4
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 5.9e-70 268.5 254 58.7
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 5.9e-70 268.5 286 55.9
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 7.7e-70 268.1 280 57.1
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 7.7e-70 268.1 246 61.4
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 1.0e-69 267.7 280 58.2
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 1.3e-69 267.3 293 56.7
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 1.3e-69 267.3 268 58.6
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 1.7e-69 266.9 279 56.6
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.2e-69 266.5 293 53.6
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.2e-69 266.5 279 54.5
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 3.8e-69 265.8 253 62.1
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 3.8e-69 265.8 293 53.9
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 5.0e-69 265.4 292 54.8
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 6.5e-69 265.0 280 57.9
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 6.5e-69 265.0 257 59.9
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 6.5e-69 265.0 246 61.0
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 1.5e-68 263.8 294 54.4
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 1.5e-68 263.8 279 55.9
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 1.5e-68 263.8 244 63.5
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.9e-68 263.5 279 58.4
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 1.9e-68 263.5 294 56.8
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 2.5e-68 263.1 284 55.3
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 4.2e-68 262.3 249 63.1
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.2e-68 262.3 270 55.2
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 9.4e-68 261.2 286 56.3
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.2e-67 260.8 271 55.4
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 1.6e-67 260.4 273 56.0
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 1.6e-67 260.4 293 54.3
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 2.1e-67 260.0 280 57.1
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 2.7e-67 259.6 286 54.5
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 2.7e-67 259.6 277 55.6
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 3.6e-67 259.2 287 53.7
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 4.7e-67 258.8 293 54.6
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 8.0e-67 258.1 259 59.5
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.0e-66 257.7 292 54.8
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.0e-66 257.7 254 59.1
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.0e-66 257.7 271 55.0
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 1.4e-66 257.3 281 54.4
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 3.0e-66 256.1 285 55.4
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 8.8e-66 254.6 278 55.4
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 1.2e-65 254.2 281 55.5
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 3.4e-65 252.7 293 52.9
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 4.4e-65 252.3 260 60.0
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 1.3e-64 250.8 258 58.1
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 1.7e-64 250.4 258 54.3
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 1.7e-64 250.4 275 54.5
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 2.8e-64 249.6 286 55.6
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 6.3e-64 248.4 290 53.1
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 8.3e-64 248.1 246 59.8
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 1.1e-63 247.7 291 52.9
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 1.4e-63 247.3 246 59.8
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 2.4e-63 246.5 252 54.8
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 5.4e-63 245.4 279 52.7
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 7.0e-63 245.0 278 54.0
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 9.1e-63 244.6 270 55.9
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.6e-62 243.8 280 53.2
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 3.5e-62 242.7 256 57.8
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 4.5e-62 242.3 257 55.3
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 4.5e-62 242.3 257 55.3
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 4.5e-62 242.3 257 54.9
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 5.9e-62 241.9 280 51.4
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 7.7e-62 241.5 258 53.5
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 7.7e-62 241.5 254 58.3
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.0e-61 241.1 280 53.2
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 1.0e-61 241.1 259 55.2
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-61 240.7 257 54.9
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 1.3e-61 240.7 268 55.6
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.7e-61 240.4 247 56.7
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 2.2e-61 240.0 254 57.9
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 3.8e-61 239.2 288 52.1
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 8.5e-61 238.0 262 56.5
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 8.5e-61 238.0 262 56.5
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 8.5e-61 238.0 276 53.6
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 1.9e-60 236.9 262 56.5
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.9e-60 236.9 262 56.5
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 2.3e-58 229.9 271 52.8
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.5e-57 227.3 254 55.5
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 2.6e-57 226.5 247 51.8
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 9.8e-57 224.6 208 60.1
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.4e-55 220.7 259 54.4
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 7.7e-54 214.9 216 58.8
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.0e-53 214.5 220 56.4
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.7e-53 213.8 267 47.9
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.8e-51 206.5 271 48.7
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 8.9e-50 201.4 246 51.6
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 9.8e-49 198.0 245 52.7
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 2.4e-47 193.4 153 68.0
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.2e-46 191.0 153 67.3
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 1.1e-44 184.5 153 65.4
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 7.5e-41 171.8 279 42.7
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 1.4e-39 167.5 183 55.2
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 3.3e-36 156.4 125 66.4
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 9.5e-36 154.8 183 50.3
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 4.0e-34 149.4 245 38.8
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.6e-33 146.7 154 55.2
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 2.7e-30 136.7 160 53.1
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.8e-26 124.0 154 50.0
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.3e-26 123.6 147 53.1
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.9e-25 118.2 183 43.7
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.4e-23 113.6 183 43.2
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 4.1e-23 112.8 105 57.1
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 7.3e-20 102.1 66 74.2
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 2.4e-18 97.1 278 29.9
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 3.6e-11 73.2 143 42.7
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 4.4e-09 66.2 127 38.6
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 1.3e-08 64.7 73 46.6
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 4.9e-08 62.8 207 26.6
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.4e-07 61.2 176 29.5
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 1.4e-07 61.2 45 64.4
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 5.4e-07 59.3 111 37.8
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 5.4e-07 59.3 42 66.7


User provided reference genes

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