Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.0e-241 839.0 514 100.0
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.5e-236 822.8 514 96.1
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 2.6e-220 768.8 514 91.4
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 2.0e-209 732.6 557 82.2
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.5e-207 725.7 514 84.2
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.1e-206 722.6 514 84.6
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.8e-205 719.5 514 84.0
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 3.0e-205 718.8 514 84.0
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 2.0e-204 716.1 514 83.3
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 3.4e-204 715.3 513 83.4
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 7.5e-204 714.1 514 82.9
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.7e-203 713.0 514 83.5
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 4.8e-203 711.4 514 82.3
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 8.3e-203 710.7 514 83.1
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 8.3e-203 710.7 514 84.2
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.4e-202 709.9 512 84.6
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 5.3e-202 708.0 514 81.7
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 7.0e-202 707.6 514 81.3
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 9.1e-202 707.2 512 82.6
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 9.1e-202 707.2 513 81.7
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 9.1e-202 707.2 514 83.1
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.0e-201 706.1 514 81.9
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 3.5e-201 705.3 514 83.1
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 5.9e-201 704.5 514 81.5
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 1.0e-200 703.7 513 82.7
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.3e-200 703.4 514 82.7
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.7e-200 703.0 514 82.5
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 1.7e-200 703.0 514 76.8
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 1.7e-200 703.0 511 78.7
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 2.2e-200 702.6 512 81.6
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.2e-200 702.6 514 77.8
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.5e-200 701.0 514 76.8
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 6.5e-200 701.0 514 82.1
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 8.5e-200 700.7 513 82.5
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.1e-199 700.3 513 82.1
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 1.5e-199 699.9 514 82.9
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 1.5e-199 699.9 511 83.2
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 2.5e-199 699.1 512 85.0
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 4.2e-199 698.4 513 82.3
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 5.5e-199 698.0 514 81.9
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 9.4e-199 697.2 514 80.7
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.2e-198 696.8 511 81.6
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 1.6e-198 696.4 511 81.6
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.6e-198 696.4 536 79.7
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 2.1e-198 696.0 510 78.0
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 2.7e-198 695.7 514 80.9
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 2.7e-198 695.7 514 81.5
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 2.7e-198 695.7 511 81.4
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 3.6e-198 695.3 514 81.5
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 6.1e-198 694.5 514 76.8
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 1.0e-197 693.7 512 81.6
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 1.0e-197 693.7 504 83.1
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 1.4e-197 693.3 510 77.1
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 3.0e-197 692.2 510 80.4
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 4.0e-197 691.8 514 81.1
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 5.2e-197 691.4 514 81.3
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 6.8e-197 691.0 510 76.7
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 8.8e-197 690.6 511 81.2
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 1.2e-196 690.3 513 81.3
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 1.2e-196 690.3 514 81.5
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.5e-196 689.9 514 81.5
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 3.4e-196 688.7 512 81.2
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 4.4e-196 688.3 511 76.1
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 5.7e-196 688.0 514 82.5
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 1.7e-195 686.4 510 80.0
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 2.8e-195 685.6 504 82.5
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 4.8e-195 684.9 511 76.5
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 4.8e-195 684.9 504 80.6
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 8.3e-195 684.1 509 75.0
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 3.1e-194 682.2 514 81.7
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 7.0e-194 681.0 514 81.3
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 7.0e-194 681.0 513 78.8
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.2e-193 680.2 513 78.6
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 1.6e-193 679.9 513 78.6
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 4.5e-193 678.3 511 76.9
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 7.7e-193 677.6 507 81.1
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 3.8e-192 675.2 514 75.5
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 3.8e-192 675.2 515 79.2
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 6.6e-192 674.5 514 81.1
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 5.5e-191 671.4 500 79.6
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 5.5e-191 671.4 514 75.1
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 5.5e-191 671.4 514 75.1
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.2e-190 670.2 511 78.5
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.2e-190 670.2 511 74.6
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 2.1e-190 669.5 527 68.9
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.0e-189 667.2 511 78.3
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.0e-189 667.2 509 78.4
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.0e-189 667.2 509 78.4
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.0e-189 667.2 535 72.5
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 4.0e-189 665.2 513 74.3
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.2e-188 663.7 504 79.0
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 1.5e-188 663.3 511 73.4
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.6e-185 653.3 542 70.7
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 2.9e-184 649.0 511 79.3
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.9e-183 646.4 514 73.7
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 1.6e-182 643.3 535 75.0
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 1.6e-182 643.3 514 68.5
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 6.1e-182 641.3 520 75.6
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 4.4e-180 635.2 525 76.8
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.9e-178 629.8 509 77.2
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.2e-177 627.1 464 84.3
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 4.6e-177 625.2 514 68.3
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 5.0e-176 621.7 485 77.5
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.4e-173 613.6 551 63.2
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 2.6e-172 609.4 468 81.6
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 6.6e-168 594.7 484 75.2
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.3e-159 565.5 513 72.1
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.2e-158 563.9 435 78.4
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 4.7e-158 562.0 428 81.3
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 4.9e-155 552.0 511 69.5
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.1e-154 550.8 414 84.3
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 2.1e-153 546.6 430 80.7
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 1.6e-142 510.4 518 63.3
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 2.2e-131 473.4 268 87.3
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 1.3e-123 447.6 254 86.6
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 1.2e-113 414.5 305 79.0
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 1.6e-105 387.5 384 58.1
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 8.5e-99 365.2 322 68.9
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 1.9e-98 364.0 210 87.1
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 4.2e-98 362.8 210 86.7
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.2e-79 301.6 365 67.7
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 3.6e-73 280.0 524 48.3
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.0e-64 251.9 258 71.3
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 8.9e-64 248.8 172 82.0
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 2.0e-60 237.7 134 90.3
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.2e-52 211.8 526 32.3
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.8e-41 174.1 146 60.3
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 1.8e-40 171.4 99 77.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 1.6e-36 158.3 212 41.5
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 3.6e-33 147.1 80 91.2
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 6.9e-32 142.9 80 81.2
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 5.8e-31 139.8 137 60.6
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 7.6e-31 139.4 175 50.9
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 4.9e-30 136.7 119 63.0
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 3.9e-27 127.1 295 30.5
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.5e-26 125.2 70 84.3
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 6.2e-25 119.8 69 84.1
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 4.0e-24 117.1 64 84.4
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 4.0e-24 117.1 64 84.4
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 5.6e-18 96.7 57 75.4
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 3.7e-17 94.0 50 80.0
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 1.5e-15 88.6 54 70.4
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 7.6e-15 86.3 47 91.5
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 4.9e-14 83.6 44 77.3
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 9.3e-13 79.3 44 72.7
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 7.9e-12 76.3 124 37.9
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 2.8e-09 67.8 105 40.0
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 1.8e-08 65.1 36 75.0
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 7.6e-07 59.7 67 41.8
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 7.6e-07 59.7 67 41.8
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.3e-06 58.9 35 74.3


User provided reference genes

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