Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.4e-205 720.7 905 100.0
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.9e-69 268.5 330 45.5
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 1.7e-38 165.6 185 44.3
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 5.6e-37 160.6 241 36.9
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.6e-36 159.1 191 40.8
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 3.6e-36 157.9 191 40.8
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 8.1e-36 156.8 191 40.3
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 1.1e-35 156.4 203 38.4
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 1.1e-35 156.4 188 43.1
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 2.4e-35 155.2 186 40.9
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 2.0e-34 152.1 186 39.8
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 2.6e-34 151.8 193 40.9
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 3.4e-34 151.4 211 37.4
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 9.9e-34 149.8 185 40.0
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 9.9e-34 149.8 198 38.4
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.3e-33 149.4 190 40.0
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.3e-33 149.4 213 37.6
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.3e-33 149.4 184 40.8
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.7e-33 149.1 189 39.2
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 3.8e-33 147.9 184 40.8
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 3.8e-33 147.9 187 41.2
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 4.9e-33 147.5 193 39.4
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 4.9e-33 147.5 199 37.2
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 6.4e-33 147.1 191 39.3
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 6.4e-33 147.1 186 39.2
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 6.4e-33 147.1 192 39.6
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 6.4e-33 147.1 211 37.4
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 8.4e-33 146.7 187 38.0
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 8.4e-33 146.7 198 36.9
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 1.1e-32 146.4 191 38.2
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.9e-32 145.6 192 40.1
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.9e-32 145.6 209 35.4
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 2.4e-32 145.2 187 39.6
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 3.2e-32 144.8 190 38.4
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 4.2e-32 144.4 199 37.2
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 5.4e-32 144.1 187 39.0
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 7.1e-32 143.7 193 38.3
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 9.3e-32 143.3 180 41.1
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 9.3e-32 143.3 188 38.8
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 1.2e-31 142.9 182 39.0
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.6e-31 142.5 186 38.2
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.6e-31 142.5 168 44.6
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 2.1e-31 142.1 190 37.4
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 2.1e-31 142.1 171 41.5
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 2.7e-31 141.7 205 35.6
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.7e-31 141.7 175 41.1
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.5e-31 141.4 175 42.3
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 4.6e-31 141.0 185 39.5
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 4.6e-31 141.0 219 34.7
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 4.6e-31 141.0 219 34.7
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 4.6e-31 141.0 168 44.0
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 4.6e-31 141.0 203 36.9
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 6.0e-31 140.6 193 38.3
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 6.0e-31 140.6 174 41.4
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 7.8e-31 140.2 189 37.0
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 7.8e-31 140.2 219 35.2
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 7.8e-31 140.2 203 36.5
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 1.0e-30 139.8 182 39.6
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 1.0e-30 139.8 182 39.6
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 1.7e-30 139.0 182 39.0
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 2.3e-30 138.7 182 37.4
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 2.3e-30 138.7 196 35.7
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.0e-30 138.3 192 36.5
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 3.9e-30 137.9 184 37.5
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 3.9e-30 137.9 188 38.3
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 5.1e-30 137.5 188 39.4
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 6.6e-30 137.1 185 36.8
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 6.6e-30 137.1 186 36.6
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 8.7e-30 136.7 189 37.6
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 8.7e-30 136.7 191 36.1
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.5e-29 136.0 183 38.3
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 1.5e-29 136.0 188 36.2
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.9e-29 135.6 191 35.6
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.9e-29 135.6 191 36.1
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 9.6e-29 133.3 184 35.9
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.3e-28 132.9 182 37.4
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.3e-28 132.9 201 34.3
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.6e-28 132.5 188 37.2
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 1.6e-28 132.5 201 33.8
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 2.1e-28 132.1 191 35.6
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 2.8e-28 131.7 178 38.2
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 1.4e-27 129.4 163 39.9
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 1.4e-27 129.4 185 38.4
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 3.1e-27 128.3 184 35.9
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 3.1e-27 128.3 184 35.9
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 5.3e-27 127.5 186 37.6
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 5.3e-27 127.5 179 38.0
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 1.5e-26 125.9 183 36.6
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.3e-25 122.9 189 36.5
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 1.7e-25 122.5 199 32.7
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 2.9e-25 121.7 201 31.8
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 2.9e-25 121.7 202 33.2
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 2.9e-25 121.7 203 33.0
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 3.8e-25 121.3 199 32.2
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 3.8e-25 121.3 201 32.3
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 8.4e-25 120.2 202 32.7
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 8.4e-25 120.2 148 41.9
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 1.1e-24 119.8 201 32.8
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 1.1e-24 119.8 194 37.6
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 1.4e-24 119.4 199 32.7
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 7.1e-24 117.1 196 36.7
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 2.3e-22 112.1 189 32.8
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.1e-19 103.2 212 31.1
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 2.0e-18 99.0 142 37.3
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.3e-17 96.3 84 53.6
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.7e-17 95.9 198 27.3
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 1.6e-15 89.4 144 34.0
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 2.1e-15 89.0 131 38.9
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.3e-14 86.3 167 31.1
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 8.7e-14 83.6 126 38.1
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 7.4e-13 80.5 74 43.2
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 7.4e-13 80.5 93 39.8
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.3e-12 79.7 88 40.9
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.6e-12 79.3 74 41.9
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 1.6e-12 79.3 74 40.5
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 1.6e-12 79.3 129 31.8
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 2.1e-12 79.0 74 40.5
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.7e-12 78.2 74 40.5
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 4.8e-12 77.8 93 35.5
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 6.2e-12 77.4 74 39.2
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 1.4e-11 76.3 72 43.1
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.4e-11 76.3 89 37.1
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 2.4e-11 75.5 70 45.7
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 4.0e-11 74.7 73 41.1
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 5.8e-10 70.9 75 37.3
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 7.6e-10 70.5 72 36.1
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 3.8e-09 68.2 148 31.1
PGR119G0174 Punica granatum HOM05D000604 ORTHO05D004856 1.1e-08 66.6 152 30.9
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.4e-08 66.2 80 38.8
GSVIVG01012163001 Vitis vinifera HOM05D000604 ORTHO05D004856 3.5e-07 61.6 136 33.8
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 1.8e-06 59.3 151 31.1
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 3.0e-06 58.5 57 40.4
MSTRG.7607 Avicennia marina HOM05D000604 ORTHO05D004856 3.9e-06 58.2 173 27.7
Glyma.14G154500 Glycine max HOM05D000604 ORTHO05D004856 3.9e-06 58.2 141 31.2
Eucgr.K02063 Eucalyptus grandis HOM05D000604 ORTHO05D004856 6.7e-06 57.4 158 27.8


User provided reference genes

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