Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 3.4e-202 708.4 425 100.0
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 1.1e-107 394.4 464 62.1
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 5.8e-101 372.1 430 58.6
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 2.2e-100 370.2 432 59.7
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 8.3e-100 368.2 430 59.8
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 1.4e-99 367.5 435 60.2
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 5.4e-99 365.5 432 60.9
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 9.2e-99 364.8 429 58.0
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 4.6e-98 362.5 433 63.5
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 6.0e-98 362.1 430 63.3
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 6.0e-98 362.1 434 58.3
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 7.8e-98 361.7 430 57.7
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 1.0e-97 361.3 437 58.4
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 1.3e-97 360.9 432 61.1
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 2.3e-97 360.1 432 58.3
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 1.5e-96 357.5 430 60.2
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 2.5e-96 356.7 433 56.6
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 3.3e-96 356.3 429 57.8
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 3.3e-96 356.3 421 63.9
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 4.3e-96 355.9 430 57.7
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 5.6e-96 355.5 430 58.4
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 7.3e-96 355.1 432 58.6
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 1.6e-95 354.0 430 58.4
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.6e-95 354.0 430 56.5
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 1.6e-95 354.0 421 61.8
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 2.1e-95 353.6 429 57.3
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 2.8e-95 353.2 429 58.5
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 8.0e-95 351.7 430 50.9
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 8.0e-95 351.7 430 56.5
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 8.0e-95 351.7 436 58.5
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 1.8e-94 350.5 430 57.7
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 4.0e-94 349.4 426 59.9
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 5.2e-94 349.0 430 55.1
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 6.8e-94 348.6 436 56.7
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 1.2e-93 347.8 429 55.0
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 7.5e-93 345.1 430 57.9
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 7.5e-93 345.1 434 58.1
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 4.9e-92 342.4 430 57.2
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 4.9e-92 342.4 429 57.1
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 4.9e-92 342.4 429 55.2
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 8.3e-92 341.7 432 56.2
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 8.3e-92 341.7 433 55.4
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 8.3e-92 341.7 435 58.4
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 1.1e-91 341.3 445 51.5
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 1.4e-91 340.9 431 57.1
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 3.2e-91 339.7 430 56.7
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 4.1e-91 339.3 432 55.8
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 4.1e-91 339.3 429 54.5
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 7.0e-91 338.6 430 59.1
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 7.0e-91 338.6 430 54.4
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 9.2e-91 338.2 450 54.0
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 9.2e-91 338.2 433 57.5
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 1.6e-90 337.4 430 59.1
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 1.6e-90 337.4 434 54.4
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 7.8e-90 335.1 437 58.4
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 7.8e-90 335.1 433 54.0
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 1.7e-89 334.0 430 55.8
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 2.3e-89 333.6 431 55.5
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 2.3e-89 333.6 430 53.0
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 6.6e-89 332.0 429 54.1
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 8.6e-89 331.6 431 55.9
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 1.9e-88 330.5 496 51.2
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 4.3e-88 329.3 431 57.3
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 7.3e-88 328.6 431 52.2
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 1.6e-87 327.4 429 52.7
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 1.6e-87 327.4 431 52.4
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 2.8e-87 326.6 431 52.7
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 3.6e-87 326.2 428 53.7
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 4.7e-87 325.9 430 49.8
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 6.2e-87 325.5 429 53.6
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 8.1e-87 325.1 430 54.9
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 1.1e-86 324.7 430 55.3
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 2.3e-86 323.6 479 54.7
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 5.2e-86 322.4 428 54.2
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 2.0e-85 320.5 432 54.4
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 2.9e-84 316.6 434 54.8
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 6.4e-84 315.5 334 59.6
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 1.1e-83 314.7 435 53.1
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 5.4e-83 312.4 430 54.7
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 1.6e-82 310.8 432 54.2
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 3.5e-82 309.7 425 52.0
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 3.5e-82 309.7 425 52.0
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 1.1e-80 304.7 433 52.7
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 1.5e-80 304.3 428 53.7
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 4.3e-80 302.8 430 52.3
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 7.3e-80 302.0 422 55.9
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 1.2e-79 301.2 436 53.7
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 1.2e-79 301.2 384 48.2
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 1.2e-79 301.2 314 61.1
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 1.2e-79 301.2 457 47.5
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 2.1e-79 300.4 487 46.6
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 2.1e-79 300.4 435 52.0
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 2.8e-79 300.1 314 60.8
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 3.6e-79 299.7 457 47.3
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 1.1e-78 298.1 429 49.7
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 9.9e-77 291.6 429 51.0
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 1.7e-76 290.8 429 52.0
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 1.9e-75 287.3 308 58.8
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 3.9e-73 279.6 429 50.6
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 5.1e-73 279.3 429 51.7
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 1.5e-72 277.7 426 50.2
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 4.7e-71 272.7 430 43.3
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 1.1e-70 271.6 428 51.2
GSVIVG01021628001 Vitis vinifera HOM05D005565 ORTHO05D006950 1.1e-70 271.6 176 77.8
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 9.9e-69 265.0 185 71.9
BcaB07g32657 Brassica carinata HOM05D005565 ORTHO05D006950 6.0e-66 255.8 179 72.6
C05p29480 Brassica napus HOM05D005565 ORTHO05D006950 6.0e-66 255.8 179 72.6
BolC5t31678H Brassica oleracea HOM05D005565 ORTHO05D006950 6.0e-66 255.8 179 72.6
FAN25G2018 Fragaria x ananassa HOM05D005565 ORTHO05D006950 3.3e-64 250.0 185 70.3
SMO351G0200 Selaginella moellendorffii HOM05D005565 ORTHO05D006950 2.8e-63 246.9 319 54.2
Nitab4.5_0004596g0030 Nicotiana tabacum HOM05D005565 ORTHO05D006950 9.0e-62 241.9 218 59.6
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 4.3e-56 223.0 420 40.5
CDE10G1222 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 1.3e-55 221.5 153 72.5
BcaC01g00198 Brassica carinata HOM05D005565 ORTHO05D006950 1.6e-55 221.1 150 73.3
CDE10G1151 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 2.9e-52 210.3 419 44.2
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 1.0e-49 201.8 176 64.2
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 1.3e-49 201.4 139 72.7
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 6.7e-49 199.1 342 51.2
Cre11.g467591 Chlamydomonas reinhardtii HOM05D005565 ORTHO05D006950 5.3e-46 189.5 247 44.5
MCO12G324 Micromonas commoda HOM05D005565 ORTHO05D006950 2.0e-45 187.6 485 35.5
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 1.7e-44 184.5 327 55.4
Haze_05809 Corylus avellana HOM05D005565 ORTHO05D006950 1.0e-41 175.3 117 72.6
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 2.3e-41 174.1 334 41.0
Haze_26712 Corylus avellana HOM05D005565 ORTHO05D006950 2.2e-39 167.5 192 51.0
Hma1.2p1_0333F.1_g128290 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 2.2e-39 167.5 95 80.0
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 2.9e-36 157.1 95 75.8
BcaB07g32658 Brassica carinata HOM05D005565 ORTHO05D006950 5.0e-36 156.4 95 76.8
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 9.4e-35 152.1 327 45.3
C07p15100 Brassica napus HOM05D005565 ORTHO05D006950 2.0e-32 144.4 101 70.3
PRCOL_00005056 Prasinoderma coloniale HOM05D005565 ORTHO05D006950 5.3e-22 109.8 203 40.9
AUR62027340 Chenopodium quinoa HOM05D005565 ORTHO05D006950 3.5e-21 107.1 296 34.5
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 4.7e-18 96.7 104 43.3
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 2.0e-16 91.3 143 42.7
SGA_v2.0_scaffold22G09881 Striga asiatica HOM05D005565 ORTHO05D006950 9.7e-16 89.0 120 40.8
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 1.6e-10 71.6 118 37.3
CDE10G0349 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 1.8e-09 68.2 78 56.4
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 1.8e-09 68.2 103 38.8
SEGI_22204 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 2.3e-09 67.8 102 38.2
HanXRQChr09g0262121 Helianthus annuus HOM05D001563 ORTHO05D001956 1.2e-08 65.5 106 35.8
SMO348G0102 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 1.2e-08 65.5 108 32.4
HanXRQChr11g0324861 Helianthus annuus HOM05D001563 ORTHO05D001956 4.4e-08 63.5 104 35.6
Lalb_Chr01g0000001 Lupinus albus HOM05D001563 ORTHO05D001956 5.7e-08 63.2 101 35.6
SGA_v2.0_scaffold273G46430 Striga asiatica HOM05D005565 ORTHO05D402892 7.5e-08 62.8 61 57.4
SEGI_21623 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 9.7e-08 62.4 113 32.7
ECA232G1424 Erigeron canadensis HOM05D001563 ORTHO05D001956 1.3e-07 62.0 107 34.6
Lsat_1_v5_gn_4_153381 Lactuca sativa HOM05D001563 ORTHO05D012319 2.2e-07 61.2 107 33.6
SGA_v2.0_scaffold74G24562 Striga asiatica HOM05D005565 ORTHO05D401758 2.2e-07 61.2 60 56.7
Psat0s2394g0080 Pisum sativum HOM05D001563 ORTHO05D001956 2.8e-07 60.8 101 36.6
Ca_19741_v3 Cicer arietinum L. HOM05D001563 ORTHO05D001956 3.7e-07 60.5 101 36.6
TPR.G34178 Trifolium pratense HOM05D001563 ORTHO05D001956 3.7e-07 60.5 101 36.6
AagrBONN_evm.TU.Sc2ySwM_117.747 Anthoceros agrestis HOM05D001563 ORTHO05D001956 4.8e-07 60.1 101 35.6
arahy.Tifrunner.gnm1.ann1.272FN3 Arachis hypogaea HOM05D001563 ORTHO05D001956 4.8e-07 60.1 101 36.6
ECA232G2130 Erigeron canadensis HOM05D001563 ORTHO05D001956 4.8e-07 60.1 106 31.1
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 4.8e-07 60.1 103 35.0
Ciclev10018985m.g Citrus clementina HOM05D000565 ORTHO05D003973 8.3e-07 59.3 142 35.2
Medtr4g031680 Medicago truncatula HOM05D001563 ORTHO05D001956 1.1e-06 58.9 101 35.6
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 1.4e-06 58.5 218 25.7
Lalb_Chr15g0080491 Lupinus albus HOM05D001563 ORTHO05D001956 1.8e-06 58.2 96 35.4
SGA_v2.0_scaffold2G01114 Striga asiatica HOM05D001563 ORTHO05D001956 1.8e-06 58.2 100 32.0
A09p11960 Brassica napus HOM05D001563 ORTHO05D001956 2.4e-06 57.8 107 30.8
BraA09t36841Z Brassica rapa HOM05D001563 ORTHO05D001956 2.4e-06 57.8 107 30.8
Phvul.005G001300 Phaseolus vulgaris HOM05D001563 ORTHO05D001956 2.4e-06 57.8 100 33.0
Glyma.04G255700 Glycine max HOM05D001563 ORTHO05D001956 3.1e-06 57.4 100 33.0
Atru.chr3.546 Acer truncatum HOM05D001563 ORTHO05D001956 4.1e-06 57.0 100 33.0
arahy.Tifrunner.gnm1.ann1.D340KN Arachis hypogaea HOM05D002097 ORTHO05D002248 4.1e-06 57.0 102 26.5
Glyma.06G324000 Glycine max HOM05D001563 ORTHO05D001956 4.1e-06 57.0 100 33.0
MBI16_g17453_MAGBIO Magnolia biondii HOM05D001563 ORTHO05D001956 4.1e-06 57.0 101 32.7
SGA_v2.0_scaffold221G42757 Striga asiatica HOM05D001563 ORTHO05D001956 5.3e-06 56.6 100 31.0
ATR0680G241 Amborella trichopoda HOM05D001563 ORTHO05D001956 7.0e-06 56.2 107 29.9
Dinv26814 Davidia involucrata HOM05D001563 ORTHO05D001956 7.0e-06 56.2 100 32.0
TAR381G0518 Trochodendron aralioides HOM05D001563 ORTHO05D001956 7.0e-06 56.2 100 34.0
MSTRG.19982 Avicennia marina HOM05D002097 ORTHO05D002248 9.1e-06 55.8 120 28.3
Nn1g05069 Nelumbo nucifera HOM05D001563 ORTHO05D001956 9.1e-06 55.8 101 32.7
TAR628G1301 Trochodendron aralioides HOM05D001563 ORTHO05D001956 9.1e-06 55.8 101 34.7
VMungo1080G1798 Vigna mungo HOM05D001563 ORTHO05D001956 9.1e-06 55.8 100 32.0


User provided reference genes

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