Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.6e-142 508.8 280 100.0
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 6.6e-122 441.0 278 84.9
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 9.9e-118 427.2 280 83.2
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 5.3e-87 325.1 281 70.5
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.0e-74 284.3 255 65.1
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.0e-73 280.0 279 62.7
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 7.4e-73 278.1 252 66.3
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 1.3e-72 277.3 281 61.6
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 4.8e-72 275.4 293 56.3
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 8.2e-72 274.6 274 59.5
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.1e-71 274.2 271 61.3
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 1.4e-71 273.9 281 59.4
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 1.8e-71 273.5 271 62.0
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 2.4e-71 273.1 255 63.1
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 3.1e-71 272.7 292 55.8
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 5.3e-71 271.9 292 58.6
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 5.3e-71 271.9 272 61.4
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 5.3e-71 271.9 264 61.7
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 5.3e-71 271.9 264 59.1
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 7.0e-71 271.6 281 58.0
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 9.1e-71 271.2 258 58.9
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 9.1e-71 271.2 292 56.2
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 9.1e-71 271.2 279 60.6
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.2e-70 270.8 281 56.2
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 2.0e-70 270.0 251 66.1
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.0e-70 270.0 315 55.2
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 2.0e-70 270.0 294 57.5
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.6e-70 269.6 291 55.0
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.6e-70 269.6 291 55.0
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 2.6e-70 269.6 287 57.5
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 2.6e-70 269.6 257 61.5
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 2.6e-70 269.6 280 58.2
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 3.5e-70 269.2 293 54.9
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 3.5e-70 269.2 257 63.0
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 5.9e-70 268.5 250 61.6
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 7.7e-70 268.1 271 61.3
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 7.7e-70 268.1 293 59.0
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 1.0e-69 267.7 281 58.4
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.7e-69 266.9 289 54.7
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 2.9e-69 266.2 286 55.9
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.9e-69 266.2 306 58.2
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 2.9e-69 266.2 290 58.3
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 5.0e-69 265.4 287 58.2
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 6.5e-69 265.0 259 61.0
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 6.5e-69 265.0 281 58.7
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 6.5e-69 265.0 295 56.3
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 6.5e-69 265.0 293 55.6
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 8.5e-69 264.6 273 60.8
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 8.5e-69 264.6 292 56.2
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 1.1e-68 264.2 281 58.4
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 1.5e-68 263.8 269 58.4
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 2.5e-68 263.1 246 61.4
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.5e-68 263.1 292 54.8
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 3.2e-68 262.7 243 63.4
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 4.2e-68 262.3 243 63.8
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 4.2e-68 262.3 294 57.5
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 7.2e-68 261.5 244 64.3
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 2.1e-67 260.0 271 61.6
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 2.7e-67 259.6 286 55.6
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 2.7e-67 259.6 244 64.3
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 3.6e-67 259.2 291 56.7
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 4.7e-67 258.8 279 55.6
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 4.7e-67 258.8 265 59.2
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 6.1e-67 258.5 250 59.2
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 6.1e-67 258.5 281 56.2
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 6.1e-67 258.5 282 57.4
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.0e-66 257.7 292 56.8
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 1.0e-66 257.7 296 58.1
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.0e-66 257.7 290 56.6
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 1.8e-66 256.9 279 58.1
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 3.0e-66 256.1 244 64.8
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 4.0e-66 255.8 293 57.0
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 6.8e-66 255.0 281 58.4
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 6.8e-66 255.0 285 54.4
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 1.5e-65 253.8 261 62.5
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.5e-65 253.8 294 53.4
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 2.0e-65 253.4 285 56.8
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 2.6e-65 253.1 281 58.0
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 3.4e-65 252.7 247 56.7
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 3.4e-65 252.7 278 53.2
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 4.4e-65 252.3 281 58.0
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 7.5e-65 251.5 280 56.1
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.3e-64 250.8 286 53.8
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 1.7e-64 250.4 257 54.9
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 2.2e-64 250.0 318 53.1
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 4.8e-64 248.8 247 59.5
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 1.4e-63 247.3 296 56.4
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 3.1e-63 246.1 247 57.5
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 4.1e-63 245.7 247 58.7
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 4.1e-63 245.7 247 56.7
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 4.1e-63 245.7 247 56.7
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 4.1e-63 245.7 247 56.3
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 4.1e-63 245.7 288 52.1
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 7.0e-63 245.0 259 58.3
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 7.0e-63 245.0 247 59.5
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 7.0e-63 245.0 259 58.3
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 7.0e-63 245.0 272 52.9
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.2e-62 244.2 247 56.3
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 1.6e-62 243.8 259 58.3
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.6e-62 243.8 259 58.3
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 1.6e-62 243.8 247 59.1
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 2.7e-62 243.0 247 55.9
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 2.7e-62 243.0 247 59.1
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.7e-61 240.4 280 53.2
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 1.5e-60 237.3 258 58.1
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 3.6e-59 232.6 294 53.7
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 1.8e-58 230.3 264 52.7
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 9.8e-57 224.6 203 62.1
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 9.8e-57 224.6 245 59.6
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 4.5e-54 215.7 216 62.5
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.5e-52 210.7 251 55.0
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 4.2e-52 209.1 252 53.6
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.2e-51 207.6 264 47.3
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.2e-49 201.1 293 45.7
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.6e-49 199.9 153 73.2
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.4e-49 199.5 231 57.6
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 4.4e-49 199.1 153 73.2
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 1.0e-45 188.0 153 69.9
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 6.1e-43 178.7 285 44.6
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 3.5e-38 162.9 196 53.6
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 2.1e-35 153.7 125 66.4
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.4e-34 151.0 154 55.2
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.4e-32 142.1 154 54.5
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 9.2e-31 138.3 241 38.2
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 2.3e-29 133.7 164 52.4
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.6e-25 120.2 164 50.0
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.9e-25 118.2 154 49.4
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.3e-24 117.9 154 48.1
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.1e-22 110.5 160 46.2
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.5e-22 109.8 105 56.2
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 5.1e-21 105.9 66 77.3
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 2.1e-19 100.5 272 30.9
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 6.2e-11 72.4 139 41.0
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 6.9e-10 68.9 119 41.2
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 1.3e-08 64.7 48 64.6
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 3.8e-08 63.2 111 39.6
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 1.1e-07 61.6 42 69.0
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 4.2e-07 59.7 173 29.5
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 5.4e-07 59.3 73 43.8


User provided reference genes

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