Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 9.2e-148 526.9 280 100.0
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.1e-119 433.7 278 84.9
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 5.1e-114 414.8 278 79.9
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 7.2e-84 314.7 278 66.9
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.1e-76 290.8 254 66.9
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 1.9e-76 290.0 272 62.1
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 2.1e-75 286.6 277 61.7
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 2.3e-74 283.1 280 61.4
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 3.0e-74 282.7 259 61.8
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.9e-74 282.3 289 58.5
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.9e-74 282.3 289 58.5
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 5.2e-74 282.0 268 62.3
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.2e-74 282.0 289 58.5
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.5e-73 280.4 292 59.9
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 1.5e-73 280.4 286 58.4
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 2.0e-73 280.0 277 61.4
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 3.3e-73 279.3 280 58.9
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 3.3e-73 279.3 290 58.3
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 9.7e-73 277.7 298 58.4
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 9.7e-73 277.7 275 58.9
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 9.7e-73 277.7 279 59.9
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 3.7e-72 275.8 272 59.9
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 4.8e-72 275.4 292 58.9
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 4.8e-72 275.4 285 58.9
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 6.3e-72 275.0 283 59.4
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 8.2e-72 274.6 245 65.3
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 2.4e-71 273.1 285 58.9
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.4e-71 273.1 279 60.2
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 4.1e-71 272.3 274 60.2
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 7.0e-71 271.6 278 59.0
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 9.1e-71 271.2 277 60.6
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 9.1e-71 271.2 291 58.1
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.2e-70 270.8 279 59.9
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 1.6e-70 270.4 292 56.8
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.6e-70 270.4 288 58.3
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 3.5e-70 269.2 280 58.6
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 4.5e-70 268.9 250 62.8
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 4.5e-70 268.9 280 57.9
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 5.9e-70 268.5 243 65.4
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 1.0e-69 267.7 250 62.4
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 1.3e-69 267.3 278 58.3
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 1.7e-69 266.9 252 63.1
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 2.2e-69 266.5 291 58.1
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 3.8e-69 265.8 243 65.0
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 5.0e-69 265.4 291 56.7
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 6.5e-69 265.0 252 59.5
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 6.5e-69 265.0 278 58.3
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 8.5e-69 264.6 281 57.3
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 8.5e-69 264.6 290 56.6
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 2.5e-68 263.1 314 54.1
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 3.2e-68 262.7 283 56.5
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 3.2e-68 262.7 259 60.6
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 4.2e-68 262.3 277 57.0
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 5.5e-68 261.9 279 57.7
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 5.5e-68 261.9 273 57.5
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 7.2e-68 261.5 271 57.2
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 7.2e-68 261.5 280 56.1
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 1.2e-67 260.8 285 57.2
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 1.6e-67 260.4 254 57.9
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.1e-67 260.0 289 57.1
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 3.6e-67 259.2 258 59.7
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 4.7e-67 258.8 247 60.3
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 8.0e-67 258.1 267 56.2
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.0e-66 257.7 258 59.7
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 1.0e-66 257.7 258 60.1
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 1.0e-66 257.7 258 60.1
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 1.0e-66 257.7 291 55.0
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.4e-66 257.3 292 54.8
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 1.4e-66 257.3 278 55.8
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.4e-66 257.3 288 55.6
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 1.8e-66 256.9 284 58.1
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 1.8e-66 256.9 278 55.8
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 2.3e-66 256.5 286 56.3
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 6.8e-66 255.0 252 57.9
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 6.8e-66 255.0 251 61.0
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 8.8e-66 254.6 244 62.7
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 1.5e-65 253.8 283 58.0
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 2.0e-65 253.4 281 55.9
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 5.7e-65 251.9 286 55.9
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 5.7e-65 251.9 283 55.5
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.8e-64 249.6 287 55.1
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 4.8e-64 248.8 288 54.9
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 6.3e-64 248.4 278 56.1
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 8.3e-64 248.1 288 53.8
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 8.3e-64 248.1 244 62.3
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 1.4e-63 247.3 283 54.8
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 3.1e-63 246.1 281 55.5
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 7.0e-63 245.0 281 55.2
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.2e-62 244.2 280 55.4
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 1.6e-62 243.8 263 56.3
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 1.6e-62 243.8 281 54.1
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 2.0e-62 243.4 284 56.0
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 2.7e-62 243.0 258 55.8
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 2.7e-62 243.0 258 56.2
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 5.9e-62 241.9 258 55.8
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 5.9e-62 241.9 267 54.7
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 5.9e-62 241.9 267 54.7
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 7.7e-62 241.5 263 55.5
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 7.7e-62 241.5 291 52.2
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 1.0e-61 241.1 264 54.2
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-61 240.7 267 54.7
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.3e-61 240.7 267 54.7
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 2.2e-61 240.0 281 54.4
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 6.5e-61 238.4 318 50.6
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 1.5e-60 237.3 244 58.6
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 2.1e-59 233.4 203 64.0
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.0e-58 231.1 250 56.8
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 5.7e-57 225.3 275 52.4
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 3.7e-56 222.6 268 54.9
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 9.1e-55 218.0 264 49.6
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.5e-54 216.1 252 54.8
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.3e-52 209.5 291 48.8
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.0e-50 202.6 250 51.2
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 5.2e-50 202.2 216 56.5
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 8.3e-48 194.9 153 68.0
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.2e-46 191.0 238 52.5
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.7e-46 189.9 153 66.0
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 4.6e-46 189.1 153 65.4
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 1.0e-45 188.0 277 47.7
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 7.5e-41 171.8 235 51.5
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 4.9e-40 169.1 125 72.0
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.4e-39 165.6 154 61.0
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.2e-35 152.1 154 59.1
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 6.2e-35 152.1 241 41.5
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.1e-34 151.4 206 52.4
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.0e-29 133.3 154 55.2
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-27 127.9 154 52.6
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.6e-27 127.5 154 52.6
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.0e-25 120.6 189 49.2
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.3e-24 117.9 105 61.0
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.3e-20 103.2 66 77.3
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 1.2e-17 94.7 292 32.5
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 4.8e-11 72.8 141 41.8
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 1.4e-10 71.2 73 52.1
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 3.1e-10 70.1 133 42.9
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 6.4e-08 62.4 173 31.2
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.9e-07 60.8 111 38.7
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 7.1e-07 58.9 42 69.0
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 9.3e-07 58.5 76 47.4
Mapoly0056s0102 Marchantia polymorpha HOM05D022864 ORTHO05D010575 4.6e-06 56.2 161 29.8
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 7.9e-06 55.5 172 27.3


User provided reference genes

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