Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c18_7140 Physcomitrium patens HOM05D006139 ORTHO05D007681 0.0e+00 1153.3 612 100.0
Mapoly0113s0020 Marchantia polymorpha HOM05D006139 ORTHO05D007681 4.5e-163 578.9 622 50.5
Psat6g243280 Pisum sativum HOM05D006139 ORTHO05D007681 2.3e-143 513.5 624 45.0
Medtr1g116980 Medicago truncatula HOM05D006139 ORTHO05D007681 1.9e-142 510.4 629 44.2
Potri.011G107400 Populus trichocarpa HOM05D006139 ORTHO05D007681 1.6e-141 507.3 625 45.1
Eucgr.F03241 Eucalyptus grandis HOM05D006139 ORTHO05D007681 2.8e-141 506.5 625 46.2
Lsat_1_v5_gn_3_24941 Lactuca sativa HOM05D006139 ORTHO05D007681 3.7e-141 506.1 625 45.1
Ciclev10019318m.g Citrus clementina HOM05D006139 ORTHO05D007681 1.1e-140 504.6 624 44.7
PGR031G2404 Punica granatum HOM05D006139 ORTHO05D007681 1.1e-140 504.6 626 45.4
Hma1.2p1_0412F.1_g147150 Hydrangea macrophylla HOM05D006139 ORTHO05D007681 1.8e-140 503.8 623 44.8
AagrBONN_evm.TU.Sc2ySwM_228.1556 Anthoceros agrestis HOM05D006139 ORTHO05D007681 9.1e-140 501.5 628 46.0
Aqoxy2G03950 Aquilegia oxysepala HOM05D006139 ORTHO05D007681 1.2e-139 501.1 625 44.8
CSS0045945 Camellia sinensis var. sinensis HOM05D006139 ORTHO05D007681 1.2e-139 501.1 625 44.2
Sopen09g036170 Solanum pennellii HOM05D006139 ORTHO05D007681 3.4e-139 499.6 624 43.8
arahy.Tifrunner.gnm1.ann1.46LBLY Arachis hypogaea HOM05D006139 ORTHO05D007681 7.7e-139 498.4 628 44.9
Manes.03G099000 Manihot esculenta HOM05D006139 ORTHO05D007681 5.0e-138 495.7 625 43.2
Solyc09g098230.3 Solanum lycopersicum HOM05D006139 ORTHO05D007681 5.0e-138 495.7 624 43.4
TWI38G2388 Tripterygium wilfordii HOM05D006139 ORTHO05D007681 6.5e-138 495.4 625 44.0
Thecc.07G123700 Theobroma cacao HOM05D006139 ORTHO05D007681 8.5e-138 495.0 625 44.3
Zm00001eb116810 Zea mays HOM05D006139 ORTHO05D007681 1.1e-137 494.6 625 43.7
Migut.N00440 Erythranthe guttata HOM05D006139 ORTHO05D007681 4.2e-137 492.7 624 43.9
Lj5g0023092 Lotus japonicus HOM05D006139 ORTHO05D007681 4.2e-137 492.7 635 43.1
RcHm_v2.0_Chr4g0409801 Rosa chinensis HOM05D006139 ORTHO05D007681 5.5e-137 492.3 625 45.0
Sabra11G0095200 Salix brachista HOM05D006139 ORTHO05D007681 5.5e-137 492.3 632 44.3
Gorai.002G052100 Gossypium raimondii HOM05D006139 ORTHO05D007681 7.2e-137 491.9 625 43.8
Lalb_Chr06g0164661 Lupinus albus HOM05D006139 ORTHO05D007681 7.2e-137 491.9 627 43.4
GSVIVG01031668001 Vitis vinifera HOM05D006139 ORTHO05D007681 7.2e-137 491.9 625 44.2
Prupe.1G178000 Prunus persica HOM05D006139 ORTHO05D007681 9.4e-137 491.5 626 43.9
VMungo0720G1636 Vigna mungo HOM05D006139 ORTHO05D007681 1.2e-136 491.1 624 43.9
Gohir.A01G052100 Gossypium hirsutum HOM05D006139 ORTHO05D007681 1.6e-136 490.7 625 43.7
Glyma.20G248800 Glycine max HOM05D006139 ORTHO05D007681 2.7e-136 490.0 625 43.7
PSO017G2886 Papaver somniferum HOM05D006139 ORTHO05D007681 6.1e-136 488.8 624 43.6
FvH4_4g12150 Fragaria vesca HOM05D006139 ORTHO05D007681 7.9e-136 488.4 625 44.3
FAN12G2778 Fragaria x ananassa HOM05D006139 ORTHO05D007681 7.9e-136 488.4 625 44.3
SGA_v2.0_scaffold109G31142 Striga asiatica HOM05D006139 ORTHO05D007681 7.9e-136 488.4 628 43.8
Duzib213G0841 Durio zibethinus HOM05D006139 ORTHO05D007681 1.4e-135 487.6 625 43.5
PSO675G6876 Papaver somniferum HOM05D006139 ORTHO05D007681 3.9e-135 486.1 624 42.8
MELO3C017678.2 Cucumis melo HOM05D006139 ORTHO05D007681 5.1e-135 485.7 624 42.9
CsaV3_4G003770 Cucumis sativus L. HOM05D006139 ORTHO05D007681 5.1e-135 485.7 624 42.5
ECA246G3778 Erigeron canadensis HOM05D006139 ORTHO05D007681 5.1e-135 485.7 626 44.4
CANSAT11G1108 Cannabis sativa HOM05D006139 ORTHO05D007681 2.6e-134 483.4 627 42.9
Sed0017452 Sechium edule HOM05D006139 ORTHO05D007681 3.3e-134 483.0 624 43.1
QL10p044141 Quercus lobata HOM05D006139 ORTHO05D007681 4.4e-134 482.6 658 43.0
MD13G1278700 Malus domestica HOM05D006139 ORTHO05D007681 6.3e-133 478.8 625 43.7
Cc03_g10570 Coffea canephora HOM05D006139 ORTHO05D007681 8.2e-133 478.4 625 43.5
BcaB02g06659 Brassica carinata HOM05D006139 ORTHO05D007681 1.1e-132 478.0 625 43.2
Sp1g15110 Schrenkiella parvula HOM05D006139 ORTHO05D007681 1.1e-132 478.0 625 43.2
Nn3g20967 Nelumbo nucifera HOM05D006139 ORTHO05D007681 1.8e-132 477.2 608 43.4
AT1G16970 Arabidopsis thaliana HOM05D006139 ORTHO05D007681 2.4e-132 476.9 626 42.0
SMO361G0769 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 2.4e-132 476.9 564 45.2
MSTRG.17865 Avicennia marina HOM05D006139 ORTHO05D007681 3.1e-132 476.5 625 43.5
BcaC05g25552 Brassica carinata HOM05D006139 ORTHO05D007681 6.9e-132 475.3 625 42.4
C05p15280 Brassica napus HOM05D006139 ORTHO05D007681 6.9e-132 475.3 625 42.6
Thhalv10007085m.g Eutrema salsugineum HOM05D006139 ORTHO05D007681 6.9e-132 475.3 625 42.9
THA.LOC104812308 Tarenaya hassleriana HOM05D006139 ORTHO05D007681 6.9e-132 475.3 624 43.3
SMO361G0513 Selaginella moellendorffii HOM05D006139 ORTHO05D007681 9.1e-132 474.9 565 45.5
Sc22g0003230 Simmondsia chinensis HOM05D006139 ORTHO05D007681 1.2e-131 474.6 625 42.7
Carub.0001s1670 Capsella rubella HOM05D006139 ORTHO05D007681 3.4e-131 473.0 624 42.0
A06p12870 Brassica napus HOM05D006139 ORTHO05D007681 1.3e-130 471.1 625 42.6
CARHR017480 Cardamine hirsuta HOM05D006139 ORTHO05D007681 6.5e-130 468.8 628 43.0
CiPaw.01G108300 Carya illinoinensis HOM05D006139 ORTHO05D007681 5.5e-129 465.7 625 42.7
Phvul.007G001600 Phaseolus vulgaris HOM05D006139 ORTHO05D007681 7.2e-129 465.3 625 42.9
Hund19684 Selenicereus undatus HOM05D006139 ORTHO05D007681 8.8e-127 458.4 619 42.8
TAR365G1167 Trochodendron aralioides HOM05D006139 ORTHO05D007681 1.1e-126 458.0 600 42.0
ATR0609G005 Amborella trichopoda HOM05D006139 ORTHO05D007681 3.3e-126 456.4 631 42.9
FAN07G2792 Fragaria x ananassa HOM05D006139 ORTHO05D007681 9.7e-126 454.9 630 41.9
BolC5t30234H Brassica oleracea HOM05D006139 ORTHO05D007681 7.0e-124 448.7 623 41.3
Rhsim07G0086500 Rhododendron simsii HOM05D006139 ORTHO05D007681 1.2e-123 448.0 716 38.8
FAN17G0552 Fragaria x ananassa HOM05D006139 ORTHO05D007681 5.9e-123 445.7 627 42.1
BraA06t24447Z Brassica rapa HOM05D006139 ORTHO05D007681 7.7e-123 445.3 622 41.2
FAN12G0395 Fragaria x ananassa HOM05D006139 ORTHO05D007681 1.3e-122 444.5 631 41.2
CBR_g19434 Chara braunii HOM05D006139 ORTHO05D007681 2.2e-122 443.7 619 44.4
Gohir.D01G041500 Gossypium hirsutum HOM05D006139 ORTHO05D007681 3.8e-122 443.0 586 42.5
AUR62003718 Chenopodium quinoa HOM05D006139 ORTHO05D007681 1.4e-116 424.5 551 44.5
arahy.Tifrunner.gnm1.ann1.JAL8JD Arachis hypogaea HOM05D006139 ORTHO05D007681 1.2e-115 421.4 639 41.2
AUR62018029 Chenopodium quinoa HOM05D006139 ORTHO05D007681 3.5e-115 419.9 639 40.4
COL.COLO4_17513 Corchorus olitorius HOM05D006139 ORTHO05D007681 7.2e-113 412.1 635 40.3
CAN.G710.40 Capsicum annuum HOM05D006139 ORTHO05D007681 9.8e-110 401.7 618 38.7
Dinv44237 Davidia involucrata HOM05D006139 ORTHO05D007681 8.3e-109 398.7 488 44.5
Lj4A728T41 Lonicera japonica HOM05D006139 ORTHO05D007681 4.1e-108 396.4 594 39.4
MBI07_g00628_MAGBIO Magnolia biondii HOM05D006139 ORTHO05D007681 1.6e-104 384.4 619 38.1
vmacro13984 Vaccinium macrocarpon HOM05D006139 ORTHO05D007681 1.0e-98 365.2 690 35.5
Haze_11079 Corylus avellana HOM05D006139 ORTHO05D007681 1.2e-96 358.2 581 39.4
Peaxi162Scf00286g00443 Petunia axillaris HOM05D006139 ORTHO05D007681 1.8e-92 344.4 571 38.0
HPP92_015930 Vanilla planifolia HOM05D006139 ORTHO05D007681 1.6e-91 341.3 437 43.7
ClCG07G016640 Citrullus lanatus HOM05D006139 ORTHO05D007681 6.2e-88 329.3 606 36.5
Nitab4.5_0001526g0130 Nicotiana tabacum HOM05D006139 ORTHO05D007681 6.2e-88 329.3 626 34.7
Oeu013397.2 Olea europaea HOM05D006139 ORTHO05D007681 5.4e-84 316.2 397 43.1
Nitab4.5_0001687g0050 Nicotiana tabacum HOM05D006139 ORTHO05D007681 3.0e-82 310.5 586 34.5
CDE02G2779 Ceratophyllum demersum HOM05D006139 ORTHO05D007681 4.9e-77 293.1 439 41.9
Atru.chr2.2053 Acer truncatum HOM05D006139 ORTHO05D007681 5.4e-68 263.1 310 46.1
TPR.G8879 Trifolium pratense HOM05D006139 ORTHO05D007681 7.8e-67 259.2 299 46.2
PGSC0003DMG400014069 Solanum tuberosum HOM05D006139 ORTHO05D007681 1.1e-65 255.4 294 45.9
Cpa.g.sc77.50 Carica papaya HOM05D006139 ORTHO05D007681 1.9e-65 254.6 317 44.2
SHI27652 Sapria himalayana HOM05D006139 ORTHO05D007681 3.6e-64 250.4 352 40.3
Aa31LG7G1410 Aethionema arabicum HOM05D006139 ORTHO05D007681 2.4e-60 237.7 612 31.9
TPR.G8868 Trifolium pratense HOM05D006139 ORTHO05D007681 2.3e-58 231.1 283 43.8
SEGI_35314 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 3.1e-55 220.7 305 42.3
Atru.chr2.2052 Acer truncatum HOM05D006139 ORTHO05D007681 2.1e-43 181.4 263 39.9
TPR.G8907 Trifolium pratense HOM05D006139 ORTHO05D007681 5.1e-42 176.8 228 45.2
DCAR_005496 Daucus carota HOM05D006139 ORTHO05D007681 1.1e-41 175.6 234 44.0
Cre13.g607500 Chlamydomonas reinhardtii HOM05D006139 ORTHO05D007681 7.4e-41 172.9 697 26.5
Ca_11423_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.2e-36 157.5 230 40.0
unitig_578.g15953 Utricularia gibba HOM05D006139 ORTHO05D007681 8.7e-34 149.4 190 43.2
DCAR_005495 Daucus carota HOM05D006139 ORTHO05D007681 1.1e-31 142.5 202 43.1
Cfa021664 Carpinus fangiana HOM05D006139 ORTHO05D007681 1.0e-29 136.0 491 24.8
unitig_578.g15954 Utricularia gibba HOM05D006139 ORTHO05D004041 2.5e-28 131.3 167 42.5
FAN22G0061 Fragaria x ananassa HOM05D006139 ORTHO05D007681 2.3e-26 124.8 166 44.0
Os07g0184900 Oryza sativa ssp. japonica HOM05D006139 ORTHO05D007681 3.9e-26 124.0 147 48.3
Ca_11425_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 3.1e-23 114.4 137 45.3
Ah.03g143030 Amaranthus hybridus HOM05D006139 ORTHO05D007681 5.3e-23 113.6 178 39.9
MCO14G338 Micromonas commoda HOM05D006139 ORTHO05D007681 2.1e-19 101.7 465 25.2
arahy.Tifrunner.gnm1.ann1.6RHH59 Arachis hypogaea HOM05D006139 ORTHO05D007681 3.6e-19 100.9 135 38.5
SEGI_31905 Sequoiadendron giganteum HOM05D006139 ORTHO05D007681 2.3e-18 98.2 73 57.5
Ca_11424_v3 Cicer arietinum L. HOM05D006139 ORTHO05D007681 2.0e-17 95.1 105 48.6
Hund20183 Selenicereus undatus HOM05D006139 ORTHO05D007681 3.5e-14 84.3 177 33.9
CANSAT78G0600 Cannabis sativa HOM05D006139 ORTHO05D007681 8.8e-10 69.7 120 32.5


User provided reference genes

Program Settings