Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 4.8e-201 705.7 928 100.0
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.0e-69 268.5 330 45.5
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 6.5e-57 226.9 224 50.4
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 2.1e-55 221.9 220 50.5
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 8.3e-52 209.9 179 54.2
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 2.4e-51 208.4 179 54.7
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 2.2e-49 201.8 192 49.0
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 2.5e-48 198.4 243 44.4
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 2.1e-47 195.3 258 40.3
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 6.1e-47 193.7 195 47.2
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 6.1e-47 193.7 183 49.7
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 1.4e-46 192.6 183 48.6
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 2.3e-46 191.8 211 45.5
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 3.0e-46 191.4 183 49.2
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 6.8e-46 190.3 181 49.2
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.8e-46 190.3 183 49.2
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 1.2e-45 189.5 182 48.9
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 2.0e-45 188.7 189 47.1
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 2.0e-45 188.7 181 48.6
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 2.6e-45 188.3 181 48.6
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 2.6e-45 188.3 191 46.6
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 2.6e-45 188.3 217 44.7
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 3.4e-45 188.0 182 47.3
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 4.4e-45 187.6 181 47.5
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 5.7e-45 187.2 203 45.3
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 7.5e-45 186.8 181 49.2
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 7.5e-45 186.8 181 47.5
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 1.3e-44 186.0 182 48.9
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.7e-44 185.7 181 47.5
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 2.8e-44 184.9 185 48.1
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 2.8e-44 184.9 181 47.0
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.9e-44 184.1 182 45.6
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.9e-44 184.1 182 45.6
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 4.9e-44 184.1 259 39.4
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 6.3e-44 183.7 201 44.8
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 6.3e-44 183.7 201 44.8
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 6.3e-44 183.7 180 47.2
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 6.3e-44 183.7 181 46.4
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 8.3e-44 183.3 181 45.3
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.4e-43 182.6 181 48.1
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.8e-43 182.2 181 46.4
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.8e-43 182.2 181 47.5
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 3.1e-43 181.4 179 46.4
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 4.1e-43 181.0 203 44.3
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 4.1e-43 181.0 188 46.8
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 4.1e-43 181.0 183 45.4
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 9.1e-43 179.9 212 42.5
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 9.1e-43 179.9 202 45.0
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 1.6e-42 179.1 182 42.9
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 2.0e-42 178.7 181 44.8
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 2.0e-42 178.7 185 45.9
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 2.0e-42 178.7 185 47.6
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 2.0e-42 178.7 185 45.9
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 2.7e-42 178.3 185 46.5
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 2.7e-42 178.3 185 47.0
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 3.5e-42 177.9 177 47.5
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 4.5e-42 177.6 181 44.8
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 5.9e-42 177.2 185 47.0
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 5.9e-42 177.2 189 45.0
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 7.7e-42 176.8 183 44.3
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.0e-41 176.4 185 47.0
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.3e-41 176.0 185 46.5
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.3e-41 176.0 194 43.8
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 1.7e-41 175.6 183 44.3
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 2.3e-41 175.3 181 44.2
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 5.0e-41 174.1 186 46.8
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 5.0e-41 174.1 183 45.9
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 6.6e-41 173.7 181 43.1
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 6.6e-41 173.7 181 45.3
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 8.6e-41 173.3 183 45.4
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 8.6e-41 173.3 181 44.8
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 8.6e-41 173.3 183 43.2
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 1.5e-40 172.6 186 44.1
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.9e-40 172.2 186 44.1
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.3e-40 171.4 186 43.5
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.3e-40 171.4 186 44.1
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 7.2e-40 170.2 177 48.0
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 8.0e-39 166.8 178 44.9
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.0e-38 166.4 181 43.6
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 6.8e-38 163.7 181 47.5
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 2.6e-37 161.8 181 47.0
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 5.7e-37 160.6 240 35.8
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 4.9e-36 157.5 185 42.2
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 4.9e-36 157.5 196 40.3
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 8.3e-36 156.8 185 40.5
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 8.3e-36 156.8 181 44.8
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 1.1e-35 156.4 187 40.6
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.8e-35 155.6 187 46.5
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 2.4e-35 155.2 194 40.2
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 3.2e-35 154.8 182 41.8
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 3.2e-35 154.8 183 42.1
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 4.1e-35 154.5 181 40.9
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 5.4e-35 154.1 181 40.9
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 7.0e-35 153.7 264 34.8
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 9.2e-35 153.3 183 41.5
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 2.7e-34 151.8 183 41.0
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 5.9e-34 150.6 185 40.5
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 5.9e-34 150.6 183 42.1
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 1.0e-33 149.8 183 39.9
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.0e-33 148.3 183 40.4
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 1.6e-31 142.5 182 39.0
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.0e-30 139.8 142 47.2
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 4.0e-30 137.9 140 48.6
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 5.2e-30 137.5 150 44.7
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 5.4e-27 127.5 138 47.1
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.1e-24 119.8 136 42.6
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 2.8e-23 115.2 122 46.7
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 1.5e-21 109.4 131 37.4
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 9.2e-19 100.1 121 43.8
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.9e-17 94.7 82 56.1
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 5.1e-17 94.4 144 38.9
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.6e-17 94.0 119 38.7
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 1.5e-16 92.8 106 41.5
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 1.2e-15 89.7 74 51.4
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 1.6e-15 89.4 117 39.3
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 2.1e-15 89.0 116 38.8
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 3.6e-15 88.2 74 51.4
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 8.1e-15 87.0 74 48.6
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 8.1e-15 87.0 110 41.8
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.4e-14 86.3 110 40.9
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 8.9e-14 83.6 74 45.9
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.2e-13 83.2 101 41.6
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 2.6e-13 82.0 77 49.4
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 4.4e-13 81.3 102 43.1
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 9.9e-13 80.1 108 38.9
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 1.3e-12 79.7 113 37.2
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 2.9e-12 78.6 73 43.8
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.1e-11 76.6 118 37.3
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 7.1e-11 73.9 110 40.0
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 3.6e-07 61.6 60 43.3
CDE02G0625 Ceratophyllum demersum HOM05D002658 ORTHO05D003000 8.1e-07 60.5 92 31.5
Pp3c14_1940 Physcomitrium patens HOM05D006053 ORTHO05D008381 1.1e-06 60.1 98 32.7
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 2.4e-06 58.9 73 39.7
PSO782G1034 Papaver somniferum HOM05D002658 ORTHO05D003000 3.1e-06 58.5 107 34.6
A06p04130 Brassica napus HOM05D000335 ORTHO05D003000 4.0e-06 58.2 137 31.4
Thhalv10020940m.g Eutrema salsugineum HOM05D002658 ORTHO05D003000 5.2e-06 57.8 81 37.0


User provided reference genes

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