Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 6.4e-248 860.5 513 100.0
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 3.2e-247 858.2 513 99.4
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 5.0e-232 807.7 511 88.8
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 1.1e-231 806.6 511 93.3
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 5.5e-231 804.3 513 92.6
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 7.1e-231 803.9 511 89.2
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 1.2e-230 803.1 511 93.5
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 2.7e-230 802.0 511 92.2
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 4.6e-230 801.2 511 89.4
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 6.1e-230 800.8 511 90.0
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 6.7e-229 797.3 511 91.8
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 6.7e-229 797.3 511 92.4
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 8.7e-229 797.0 511 92.4
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 1.9e-228 795.8 511 92.4
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 2.5e-228 795.4 511 88.5
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 2.5e-228 795.4 511 92.4
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 3.3e-228 795.0 511 93.0
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 3.3e-228 795.0 511 92.6
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 3.3e-228 795.0 517 90.7
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 4.3e-228 794.7 513 92.0
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 7.4e-228 793.9 511 92.4
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 9.7e-228 793.5 513 92.8
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 1.6e-227 792.7 511 87.9
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 2.2e-227 792.3 511 92.0
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 2.8e-227 792.0 509 86.6
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 2.8e-227 792.0 511 92.2
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 3.1e-226 788.5 511 86.9
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 2.0e-225 785.8 511 90.0
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.9e-225 784.3 511 90.4
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 5.9e-225 784.3 511 91.2
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 7.7e-225 783.9 511 91.0
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 1.3e-224 783.1 511 91.0
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 1.3e-224 783.1 504 92.1
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 2.9e-224 781.9 513 90.4
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 3.8e-224 781.6 511 89.4
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.1e-223 780.0 511 89.0
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.4e-223 779.6 511 90.4
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.9e-223 779.2 511 90.6
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 4.2e-223 778.1 510 90.8
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 5.5e-223 777.7 511 91.0
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 7.2e-223 777.3 511 90.6
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 1.2e-222 776.5 511 90.0
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 1.6e-222 776.2 513 89.9
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.6e-222 776.2 511 89.6
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 4.6e-222 774.6 512 88.7
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 2.3e-221 772.3 511 91.0
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 3.9e-221 771.5 536 83.4
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 5.1e-221 771.2 511 89.4
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 6.7e-221 770.8 511 88.5
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 8.8e-221 770.4 511 89.2
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 1.5e-220 769.6 513 84.4
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.0e-220 769.2 511 84.9
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 3.3e-220 768.5 512 87.9
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.3e-219 766.5 512 89.3
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.7e-219 766.1 511 88.3
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 2.8e-219 765.4 513 90.8
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 2.8e-219 765.4 511 85.3
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 3.7e-219 765.0 511 88.8
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 3.7e-219 765.0 513 86.9
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 4.8e-219 764.6 511 89.0
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 6.3e-219 764.2 511 88.1
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 8.2e-219 763.8 512 87.3
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 1.1e-218 763.5 510 84.5
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.8e-218 762.7 511 87.9
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 4.1e-218 761.5 512 88.1
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 5.3e-218 761.1 513 83.4
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 1.2e-217 760.0 504 87.9
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 5.9e-217 757.7 511 89.0
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 7.7e-217 757.3 511 84.3
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 7.7e-217 757.3 511 84.3
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 6.5e-216 754.2 513 84.2
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 6.5e-216 754.2 504 89.1
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 1.4e-215 753.1 533 76.7
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 3.2e-215 751.9 513 81.7
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 7.2e-215 750.7 512 88.7
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.2e-214 750.0 511 86.1
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 2.1e-214 749.2 511 87.9
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 2.7e-214 748.8 511 87.7
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 2.7e-214 748.8 504 88.3
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 3.6e-214 748.4 511 89.2
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 8.8e-213 743.8 539 80.1
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 5.7e-212 741.1 513 84.4
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 7.4e-212 740.7 513 84.4
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 2.2e-211 739.2 500 85.4
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 4.8e-211 738.0 511 84.3
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 4.8e-211 738.0 511 84.3
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 7.0e-210 734.2 511 83.2
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 9.1e-210 733.8 507 86.2
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 7.7e-209 730.7 511 85.3
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 3.3e-204 715.3 511 76.7
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 9.7e-204 713.8 485 88.2
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.2e-203 712.6 507 86.2
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 6.3e-203 711.1 513 83.2
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 4.1e-202 708.4 532 81.0
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 4.1e-202 708.4 520 81.3
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 6.5e-200 701.0 511 79.6
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 5.5e-199 698.0 511 81.6
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 9.4e-199 697.2 511 75.5
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 4.7e-198 694.9 554 76.4
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 4.7e-198 694.9 523 82.6
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 5.7e-196 688.0 511 80.8
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 1.7e-195 686.4 549 70.7
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 3.1e-194 682.2 465 90.3
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 5.9e-193 677.9 484 85.3
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.2e-192 676.0 461 90.7
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 5.0e-192 674.9 513 72.1
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 4.4e-188 661.8 430 94.9
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.1e-182 642.9 511 80.6
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 2.3e-181 639.4 435 87.6
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 4.9e-179 631.7 428 89.5
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 2.1e-161 573.2 520 67.3
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.1e-157 560.8 414 85.7
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 4.6e-153 545.4 512 66.8
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 2.3e-136 490.0 266 88.7
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 4.0e-133 479.2 251 93.6
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 2.9e-123 446.4 322 83.2
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 1.2e-121 441.0 310 80.6
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 2.8e-110 403.3 382 58.6
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 1.2e-105 387.9 207 94.7
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 2.7e-105 386.7 207 94.2
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 7.7e-92 342.0 365 72.6
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 7.0e-77 292.4 257 77.4
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 1.5e-74 284.6 525 48.4
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 4.5e-68 263.1 177 86.4
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 1.3e-62 245.0 131 94.7
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.4e-61 241.5 528 35.2
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 3.0e-43 180.6 99 81.8
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.1e-42 178.7 149 61.1
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 4.7e-41 173.3 253 38.7
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 3.8e-38 163.7 80 92.5
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 3.0e-35 154.1 179 53.6
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 2.4e-32 144.4 106 72.6
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 3.1e-32 144.1 137 61.3
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 3.1e-32 144.1 77 90.9
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.2e-31 142.1 295 32.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 7.8e-28 129.4 70 87.1
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 3.9e-27 127.1 69 85.5
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 4.8e-25 120.2 64 84.4
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 4.8e-25 120.2 64 84.4
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 4.6e-20 103.6 56 80.4
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 1.5e-18 98.6 56 73.2
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 2.5e-18 97.8 50 88.0
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 8.1e-17 92.8 75 60.0
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 8.1e-17 92.8 75 60.0
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 4.0e-16 90.5 126 41.3
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 6.9e-16 89.7 47 95.7
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 3.8e-14 84.0 44 79.5
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 7.1e-13 79.7 44 75.0
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 2.7e-12 77.8 105 44.8
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.8e-11 75.1 134 70.9
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 8.7e-11 72.8 36 83.3
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 1.5e-07 62.0 35 77.1
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 1.3e-06 58.9 29 82.8
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 3.8e-06 57.4 60 55.0
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 8.4e-06 56.2 74 51.4


User provided reference genes

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