Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 4.9e-244 847.4 447 100.0
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 8.5e-188 660.6 440 77.0
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.0e-180 637.1 459 74.3
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.9e-179 632.9 459 74.7
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 2.1e-178 629.4 462 73.6
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 6.8e-177 624.4 459 73.6
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.2e-176 623.6 448 73.2
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.5e-176 623.2 459 73.6
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.0e-176 622.9 459 73.6
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.7e-175 619.8 450 72.4
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.7e-175 619.8 459 73.4
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 2.2e-175 619.4 442 71.3
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 5.4e-174 614.8 451 71.0
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 1.0e-172 610.5 464 69.6
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 2.5e-171 605.9 451 69.6
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 2.8e-170 602.4 447 68.9
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 1.8e-169 599.7 452 68.4
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 4.0e-169 598.6 439 70.8
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 6.8e-169 597.8 472 65.9
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 6.8e-169 597.8 472 65.9
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.2e-168 597.0 437 72.5
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 1.2e-168 597.0 445 71.5
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.2e-168 597.0 447 69.6
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.4e-168 595.1 447 69.4
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 9.8e-168 594.0 446 69.1
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.4e-166 590.1 450 68.0
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 9.2e-166 587.4 460 68.5
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 9.2e-166 587.4 443 68.4
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 1.2e-165 587.0 455 70.5
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 3.5e-165 585.5 447 68.7
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 4.5e-165 585.1 462 66.2
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 5.9e-165 584.7 438 67.6
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 1.7e-164 583.2 446 68.2
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 2.3e-164 582.8 434 69.8
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 5.0e-164 581.6 449 68.6
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 4.3e-163 578.6 444 68.2
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 4.3e-163 578.6 447 70.5
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 7.3e-163 577.8 444 68.0
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 1.2e-162 577.0 437 70.0
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 1.2e-162 577.0 442 67.9
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.6e-162 576.6 456 67.1
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 2.1e-162 576.2 444 67.8
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 2.1e-162 576.2 447 68.2
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 3.6e-162 575.5 444 66.9
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.7e-162 575.1 446 68.2
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 6.1e-162 574.7 452 66.2
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 8.0e-162 574.3 452 69.5
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.0e-161 573.9 440 68.6
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 1.4e-161 573.5 437 67.3
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 2.3e-161 572.8 444 67.6
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 3.1e-161 572.4 437 68.2
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 4.0e-161 572.0 442 67.4
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 6.8e-161 571.2 441 66.4
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 2.0e-160 569.7 451 70.3
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 3.4e-160 568.9 437 69.6
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 3.4e-160 568.9 444 66.7
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.4e-160 568.5 432 69.9
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 1.3e-159 567.0 437 68.9
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 2.2e-159 566.2 447 66.2
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 4.9e-159 565.1 437 69.3
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 2.0e-157 559.7 440 68.4
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 2.7e-157 559.3 448 66.7
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 4.6e-157 558.5 454 64.5
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 4.6e-157 558.5 449 65.3
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 6.0e-157 558.1 454 65.0
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 6.0e-157 558.1 441 68.5
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 7.8e-157 557.8 438 68.7
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 5.0e-156 555.1 435 68.0
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 5.6e-155 551.6 454 64.8
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 1.1e-153 547.4 450 64.7
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 2.6e-152 542.7 443 66.8
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.1e-150 537.3 454 63.9
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.2e-149 533.9 436 65.1
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.7e-149 532.7 454 61.9
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 3.5e-149 532.3 442 67.0
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 6.0e-149 531.6 446 65.2
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 2.1e-146 523.1 398 68.6
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 1.7e-143 513.5 509 57.8
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.6e-141 506.9 455 60.7
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 4.6e-141 505.4 456 61.2
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 3.9e-140 502.3 542 54.6
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 2.5e-139 499.6 457 60.4
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 3.3e-139 499.2 446 60.5
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 5.6e-139 498.4 435 63.2
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.8e-137 493.4 406 66.5
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 4.0e-137 492.3 474 59.9
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 5.8e-136 488.4 429 61.5
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.2e-135 486.5 436 61.7
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 6.4e-135 485.0 429 60.6
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 7.1e-134 481.5 350 71.1
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 4.6e-133 478.8 455 59.3
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 6.6e-132 474.9 447 58.2
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 5.8e-128 461.8 465 56.1
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 2.9e-127 459.5 436 57.8
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 3.8e-127 459.1 267 83.1
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 8.4e-127 458.0 415 62.2
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 4.6e-125 452.2 457 56.7
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.7e-124 450.3 457 58.4
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 3.4e-120 436.0 264 81.4
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 4.3e-115 419.1 249 80.3
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 5.6e-115 418.7 249 82.3
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.3e-114 417.5 359 62.4
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 1.6e-114 417.2 357 64.7
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 8.1e-114 414.8 327 66.1
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 4.6e-109 399.1 445 49.4
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.1e-106 390.2 224 84.8
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 2.6e-104 383.3 431 52.9
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 2.6e-104 383.3 434 50.0
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 2.7e-101 373.2 417 51.8
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.9e-100 369.4 414 49.3
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.3e-99 365.9 318 66.7
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 2.8e-90 336.7 488 42.4
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 5.7e-83 312.4 321 58.3
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 3.7e-82 309.7 282 62.8
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.9e-71 273.5 246 59.3
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 5.0e-71 272.7 330 53.6
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 2.0e-67 260.8 290 54.1
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 1.2e-64 251.5 247 57.5
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.9e-62 244.2 290 49.0
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 2.0e-59 234.2 210 61.4
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 2.0e-56 224.2 430 34.9
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 5.5e-54 216.1 215 56.7
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 1.3e-50 204.9 258 45.0
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.0e-47 195.3 216 53.2
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.3e-47 194.9 394 37.8
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 6.6e-47 192.6 255 43.1
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.1e-46 191.8 136 65.4
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 6.4e-42 176.0 106 83.0
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 4.1e-41 173.3 86 94.2
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 6.6e-39 166.0 97 84.5
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 4.4e-35 153.3 169 53.3
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 3.2e-33 147.1 87 78.2
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 1.2e-32 145.2 74 91.9
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 7.3e-30 136.0 86 76.7
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 3.4e-27 127.1 86 66.3
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 8.3e-26 122.5 252 30.6
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 2.4e-20 104.4 67 74.6
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 2.6e-19 100.9 103 55.3
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 7.6e-19 99.4 69 76.8
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.7e-18 98.2 188 38.3
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 1.1e-14 85.5 81 60.5
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.5e-14 84.3 61 65.6
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.6e-13 80.5 188 33.5
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.1e-12 79.0 45 80.0
BcaB01g02418 Brassica carinata HOM05D005149 ORTHO05D006251 5.3e-12 76.6 74 55.4
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 1.5e-06 58.5 36 75.0
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.5e-06 58.5 44 61.4


User provided reference genes

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