Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.010G226901 Populus trichocarpa HOM05D006329 ORTHO05D028485 6.5e-31 136.7 68 100.0
ClCG08G007690 Citrullus lanatus HOM05D006329 ORTHO05D008357 1.2e-13 79.3 51 76.5
Manes.05G201000 Manihot esculenta HOM05D006329 ORTHO05D008357 1.6e-13 79.0 51 76.5
Actinidia34805 Actinidia chinensis HOM05D006329 ORTHO05D008357 2.1e-13 78.6 51 78.4
vmacro04842 Vaccinium macrocarpon HOM05D006329 ORTHO05D008357 2.1e-13 78.6 51 76.5
Prupe.2G208900 Prunus persica HOM05D006329 ORTHO05D008357 2.7e-13 78.2 51 78.4
MELO3C019822.2 Cucumis melo HOM05D006329 ORTHO05D008357 3.6e-13 77.8 51 78.4
Cpa.g.sc53.128 Carica papaya HOM05D006329 ORTHO05D008357 4.7e-13 77.4 51 74.5
DCAR_005490 Daucus carota HOM05D006329 ORTHO05D008357 4.7e-13 77.4 51 76.5
FvH4_7g18810 Fragaria vesca HOM05D006329 ORTHO05D008357 4.7e-13 77.4 51 78.4
Lj3A938T44 Lonicera japonica HOM05D006329 ORTHO05D008357 4.7e-13 77.4 56 73.2
Solyc11g008360.3 Solanum lycopersicum HOM05D006329 ORTHO05D008357 6.1e-13 77.0 51 76.5
Sopen11g004170 Solanum pennellii HOM05D006329 ORTHO05D008357 6.1e-13 77.0 51 76.5
TAR623G1379 Trochodendron aralioides HOM05D006329 ORTHO05D008357 6.1e-13 77.0 51 74.5
Nitab4.5_0001450g0040 Nicotiana tabacum HOM05D006329 ORTHO05D008357 8.0e-13 76.6 51 74.5
Nitab4.5_0001659g0150 Nicotiana tabacum HOM05D006329 ORTHO05D008357 8.0e-13 76.6 51 74.5
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.0e-12 76.3 51 76.5
FAN10G3782 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.0e-12 76.3 51 76.5
Rhsim09G0148200 Rhododendron simsii HOM05D000461 ORTHO05D001829 1.0e-12 76.3 51 74.5
RhsimUnG0185600 Rhododendron simsii HOM05D000461 ORTHO05D001829 1.0e-12 76.3 51 74.5
RcHm_v2.0_Chr1g0362601 Rosa chinensis HOM05D006329 ORTHO05D008357 1.0e-12 76.3 51 76.5
FAN10G0068 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.4e-12 75.9 51 76.5
GSVIVG01016221001 Vitis vinifera HOM05D006329 ORTHO05D008357 1.4e-12 75.9 51 74.5
MSTRG.389 Avicennia marina HOM05D006329 ORTHO05D008357 1.8e-12 75.5 51 76.5
CsaV3_6G036680 Cucumis sativus L. HOM05D006329 ORTHO05D008357 1.8e-12 75.5 51 74.5
FAN06G0494 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.8e-12 75.5 51 76.5
MD07G1170000 Malus domestica HOM05D006329 ORTHO05D008357 1.8e-12 75.5 51 76.5
Oeu013841.1 Olea europaea HOM05D006329 ORTHO05D008357 1.8e-12 75.5 51 74.5
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 2.3e-12 75.1 51 72.5
PGSC0003DMG400007434 Solanum tuberosum HOM05D006329 ORTHO05D008357 2.3e-12 75.1 51 76.5
CAN.G321.64 Capsicum annuum HOM05D006329 ORTHO05D008357 3.0e-12 74.7 51 74.5
CiPaw.01G268700 Carya illinoinensis HOM05D006329 ORTHO05D008357 3.0e-12 74.7 51 74.5
Nn6g35280 Nelumbo nucifera HOM05D006329 ORTHO05D008357 3.0e-12 74.7 51 74.5
Sed0004104 Sechium edule HOM05D006329 ORTHO05D008357 3.0e-12 74.7 51 74.5
Ciclev10031516m.g Citrus clementina HOM05D006329 ORTHO05D008357 4.0e-12 74.3 51 74.5
ECA238G1295 Erigeron canadensis HOM05D006329 ORTHO05D001676 4.0e-12 74.3 51 76.5
FAN06G3910 Fragaria x ananassa HOM05D006329 ORTHO05D008357 4.0e-12 74.3 51 76.5
Aqoxy1G01144 Aquilegia oxysepala HOM05D006329 ORTHO05D008357 5.2e-12 73.9 51 70.6
Haze_16856 Corylus avellana HOM05D006329 ORTHO05D008357 5.2e-12 73.9 51 70.6
Hma1.2p1_2894F.1_g329960 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 5.2e-12 73.9 51 74.5
Peaxi162Scf00145g01311 Petunia axillaris HOM05D006329 ORTHO05D008357 6.8e-12 73.6 51 72.5
Thecc.10G083200 Theobroma cacao HOM05D006329 ORTHO05D008357 6.8e-12 73.6 51 72.5
QL08p054507 Quercus lobata HOM05D006329 ORTHO05D008357 8.8e-12 73.2 51 72.5
Migut.F01702 Erythranthe guttata HOM05D006329 ORTHO05D008357 1.2e-11 72.8 51 72.5
Lsat_1_v5_gn_2_113040 Lactuca sativa HOM05D006329 ORTHO05D008357 1.2e-11 72.8 51 72.5
Sabra08G0023700 Salix brachista HOM05D006329 ORTHO05D008357 1.2e-11 72.8 51 74.5
Potri.008G035500 Populus trichocarpa HOM05D006329 ORTHO05D008357 1.5e-11 72.4 51 72.5
CAN.G184.4 Capsicum annuum HOM05D006329 ORTHO05D028485 2.6e-11 71.6 52 73.1
Cfa001679 Carpinus fangiana HOM05D006329 ORTHO05D008357 2.6e-11 71.6 51 68.6
QL08p054383 Quercus lobata HOM05D006329 ORTHO05D008357 2.6e-11 71.6 51 72.5
HanXRQChr14g0456591 Helianthus annuus HOM05D006329 ORTHO05D008357 3.4e-11 71.2 51 72.5
MBI18_g02633_MAGBIO Magnolia biondii HOM05D006329 ORTHO05D008357 3.4e-11 71.2 51 66.7
SGA_v2.0_scaffold51G18714 Striga asiatica HOM05D006329 ORTHO05D008357 3.4e-11 71.2 51 68.6
COL.COLO4_17136 Corchorus olitorius HOM05D006329 ORTHO05D008357 5.7e-11 70.5 51 72.5
SalBow6G7241 Salvia bowleyana HOM05D006329 ORTHO05D008357 5.7e-11 70.5 51 70.6
arahy.Tifrunner.gnm1.ann1.21BGD2 Arachis hypogaea HOM05D006329 ORTHO05D008357 9.8e-11 69.7 54 64.8
Duzib114G0755 Durio zibethinus HOM05D006329 ORTHO05D008357 9.8e-11 69.7 51 68.6
Cc02_g10940 Coffea canephora HOM05D006329 ORTHO05D008357 1.7e-10 68.9 51 66.7
Glyma.20G182966 Glycine max HOM05D006329 ORTHO05D028485 2.8e-10 68.2 56 60.7
Gohir.A10G203300 Gossypium hirsutum HOM05D006329 ORTHO05D008357 2.8e-10 68.2 51 70.6
Gohir.D10G211400 Gossypium hirsutum HOM05D006329 ORTHO05D008357 2.8e-10 68.2 51 70.6
Gorai.011G237100 Gossypium raimondii HOM05D006329 ORTHO05D008357 2.8e-10 68.2 51 70.6
arahy.Tifrunner.gnm1.ann1.KFTR8M Arachis hypogaea HOM05D006329 ORTHO05D008357 3.7e-10 67.8 51 66.7
Medtr1g094190 Medicago truncatula HOM05D006329 ORTHO05D008357 4.8e-10 67.4 51 66.7
Eucgr.G02867 Eucalyptus grandis HOM05D006329 ORTHO05D008357 8.3e-10 66.6 51 64.7
PSO339G5012 Papaver somniferum HOM05D006329 ORTHO05D008357 1.4e-09 65.9 51 66.7
THA.LOC104824234 Tarenaya hassleriana HOM05D006329 ORTHO05D008357 1.4e-09 65.9 51 64.7
PSO063G6532 Papaver somniferum HOM05D006329 ORTHO05D008357 1.8e-09 65.5 51 64.7
AUR62002759 Chenopodium quinoa HOM05D006329 ORTHO05D008357 2.4e-09 65.1 51 64.7
Ca_10544_v3 Cicer arietinum L. HOM05D006329 ORTHO05D008357 2.4e-09 65.1 51 64.7
CANSAT56G2601 Cannabis sativa HOM05D006329 ORTHO05D008357 4.1e-09 64.3 51 66.7
TPR.G10288 Trifolium pratense HOM05D006329 ORTHO05D008357 4.1e-09 64.3 51 64.7
Lj5g0015116 Lotus japonicus HOM05D006329 ORTHO05D008357 5.4e-09 63.9 51 64.7
Ah.02g128110 Amaranthus hybridus HOM05D006329 ORTHO05D008357 9.1e-09 63.2 51 64.7
Phvul.007G098900 Phaseolus vulgaris HOM05D006329 ORTHO05D008357 9.1e-09 63.2 51 60.8
Hund20700 Selenicereus undatus HOM05D006329 ORTHO05D008357 9.1e-09 63.2 51 62.7
EL10Ac6g14260 Beta vulgaris HOM05D006329 ORTHO05D008357 2.0e-08 62.0 51 60.8
BcaB02g09141 Brassica carinata HOM05D006329 ORTHO05D008357 2.0e-08 62.0 51 62.7
BcaC02g12042 Brassica carinata HOM05D006329 ORTHO05D008357 2.0e-08 62.0 51 62.7
A05p07160 Brassica napus HOM05D006329 ORTHO05D008357 2.0e-08 62.0 51 62.7
C04p08570 Brassica napus HOM05D006329 ORTHO05D008357 2.0e-08 62.0 51 62.7
BolC4t22452H Brassica oleracea HOM05D006329 ORTHO05D008357 2.0e-08 62.0 51 62.7
PGR142G3823 Punica granatum HOM05D006329 ORTHO05D008357 2.0e-08 62.0 51 62.7
EL10Ac4g09587 Beta vulgaris HOM05D006329 ORTHO05D008357 2.7e-08 61.6 51 60.8
BraA05t19681Z Brassica rapa HOM05D006329 ORTHO05D008357 2.7e-08 61.6 51 60.8
Aa31LG5G20460 Aethionema arabicum HOM05D006329 ORTHO05D008357 3.5e-08 61.2 51 56.9
Lalb_Chr21g0313541 Lupinus albus HOM05D006329 ORTHO05D008357 3.5e-08 61.2 51 60.8
Lalb_Chr21g0313671 Lupinus albus HOM05D006329 ORTHO05D008357 3.5e-08 61.2 51 60.8
AL4G36440 Arabidopsis lyrata HOM05D006329 ORTHO05D008357 4.5e-08 60.8 51 58.8
CSS0005771 Camellia sinensis var. sinensis HOM05D006329 ORTHO05D008357 5.9e-08 60.5 47 63.8
Glyma.10G207800 Glycine max HOM05D006329 ORTHO05D008357 5.9e-08 60.5 51 60.8
Psat6g180040 Pisum sativum HOM05D006329 ORTHO05D008357 5.9e-08 60.5 51 60.8
AT2G39140 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 7.7e-08 60.1 51 58.8
CDE03G0204 Ceratophyllum demersum HOM05D006329 ORTHO05D008357 1.0e-07 59.7 51 62.7
Thhalv10016747m.g Eutrema salsugineum HOM05D006329 ORTHO05D008357 1.0e-07 59.7 51 58.8
HPP92_026744 Vanilla planifolia HOM05D006329 ORTHO05D008357 1.0e-07 59.7 51 60.8
Carub.0004s2119 Capsella rubella HOM05D006329 ORTHO05D008357 2.3e-07 58.5 51 56.9
Sp4g21490 Schrenkiella parvula HOM05D006329 ORTHO05D008357 2.3e-07 58.5 51 58.8
CARHR133910 Cardamine hirsuta HOM05D006329 ORTHO05D008357 6.6e-07 57.0 51 58.8
VMungo0251G3605 Vigna mungo HOM05D006329 ORTHO05D008357 8.6e-07 56.6 47 57.4
HPP92_026018 Vanilla planifolia HOM05D006329 ORTHO05D008357 1.1e-06 56.2 51 62.7
ATR0219G015 Amborella trichopoda HOM05D006329 ORTHO05D008357 4.2e-06 54.3 51 54.9


User provided reference genes

Program Settings