Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 2.4e-63 245.4 125 100.0
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 1.0e-61 240.0 124 94.4
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 8.5e-61 236.9 124 94.4
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 3.2e-60 235.0 121 95.9
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 5.5e-60 234.2 122 95.1
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 1.2e-59 233.0 121 94.2
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 1.6e-59 232.6 121 94.2
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 2.7e-59 231.9 121 94.2
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 3.6e-59 231.5 121 93.4
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 4.7e-59 231.1 121 94.2
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 6.1e-59 230.7 120 94.2
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 6.1e-59 230.7 120 94.2
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 6.1e-59 230.7 121 93.4
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 6.1e-59 230.7 121 92.6
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 6.1e-59 230.7 120 94.2
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 6.1e-59 230.7 120 94.2
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 6.1e-59 230.7 120 94.2
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 6.1e-59 230.7 121 92.6
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 6.1e-59 230.7 120 94.2
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 8.0e-59 230.3 121 92.6
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 8.0e-59 230.3 121 93.4
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 1.0e-58 229.9 121 92.6
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 1.0e-58 229.9 121 93.4
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.4e-58 229.6 121 92.6
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 1.4e-58 229.6 120 93.3
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 1.4e-58 229.6 120 93.3
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 1.4e-58 229.6 121 92.6
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 1.4e-58 229.6 120 93.3
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 1.8e-58 229.2 120 92.5
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 1.8e-58 229.2 121 93.4
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 1.8e-58 229.2 121 93.4
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 1.8e-58 229.2 121 93.4
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 1.8e-58 229.2 121 92.6
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 1.8e-58 229.2 120 93.3
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 2.3e-58 228.8 121 92.6
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 2.3e-58 228.8 120 92.5
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 2.3e-58 228.8 120 92.5
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 2.3e-58 228.8 121 92.6
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 3.0e-58 228.4 121 92.6
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 3.0e-58 228.4 121 91.7
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 3.9e-58 228.0 120 93.3
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 5.2e-58 227.6 120 92.5
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 5.2e-58 227.6 120 92.5
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 5.2e-58 227.6 120 92.5
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 6.7e-58 227.3 124 89.5
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 8.8e-58 226.9 121 92.6
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 8.8e-58 226.9 121 92.6
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 8.8e-58 226.9 121 92.6
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 8.8e-58 226.9 121 90.9
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 8.8e-58 226.9 118 94.1
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.1e-57 226.5 121 90.9
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 1.1e-57 226.5 121 92.6
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 1.5e-57 226.1 117 94.9
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 2.0e-57 225.7 121 91.7
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 2.6e-57 225.3 121 90.9
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 3.3e-57 224.9 121 91.7
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 4.4e-57 224.6 119 91.6
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 5.7e-57 224.2 121 90.1
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 7.4e-57 223.8 121 90.1
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 7.4e-57 223.8 118 92.4
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 7.4e-57 223.8 120 90.8
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 1.3e-56 223.0 122 90.2
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 1.3e-56 223.0 121 89.3
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 1.3e-56 223.0 122 90.2
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 1.3e-56 223.0 121 90.9
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 1.7e-56 222.6 118 92.4
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 2.8e-56 221.9 121 89.3
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 2.8e-56 221.9 121 89.3
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 2.8e-56 221.9 121 89.3
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 2.8e-56 221.9 121 89.3
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 2.8e-56 221.9 119 91.6
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 2.8e-56 221.9 119 91.6
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 2.8e-56 221.9 116 92.2
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 2.8e-56 221.9 116 92.2
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 2.8e-56 221.9 116 92.2
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 4.8e-56 221.1 121 88.4
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 4.8e-56 221.1 117 91.5
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 6.3e-56 220.7 121 87.6
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 6.3e-56 220.7 121 87.6
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 8.2e-56 220.3 121 88.4
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 8.2e-56 220.3 124 85.5
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 8.2e-56 220.3 121 88.4
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 1.1e-55 219.9 118 90.7
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.1e-55 219.9 121 90.1
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 1.1e-55 219.9 121 88.4
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 1.4e-55 219.5 118 89.8
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 1.8e-55 219.2 121 88.4
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 1.8e-55 219.2 121 88.4
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 1.8e-55 219.2 121 87.6
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 1.8e-55 219.2 121 87.6
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 1.8e-55 219.2 121 87.6
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 2.4e-55 218.8 118 89.8
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 2.4e-55 218.8 118 89.8
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 3.1e-55 218.4 120 88.3
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 3.1e-55 218.4 118 89.8
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 3.1e-55 218.4 118 89.8
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 4.1e-55 218.0 118 89.8
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 7.0e-55 217.2 121 88.4
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 9.1e-55 216.9 121 87.6
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 9.1e-55 216.9 121 87.6
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 9.1e-55 216.9 118 91.5
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 2.0e-54 215.7 114 93.9
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 2.6e-54 215.3 114 93.9
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 5.9e-54 214.2 118 88.1
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 5.9e-54 214.2 114 93.0
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 1.3e-53 213.0 116 87.9
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 8.5e-53 210.3 116 87.1
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 5.5e-52 207.6 121 86.0
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 9.4e-52 206.8 117 84.6
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 2.1e-51 205.7 113 88.5
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 3.6e-51 204.9 117 85.5
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 4.7e-51 204.5 117 85.5
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 6.1e-51 204.1 119 84.0
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 1.4e-50 203.0 121 82.6
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 2.0e-46 189.1 114 82.5
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 2.7e-46 188.7 121 73.6
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 1.3e-45 186.4 135 70.4
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 3.8e-45 184.9 114 76.3
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 3.2e-44 181.8 104 85.6
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 6.1e-43 177.6 113 76.1
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 2.4e-39 165.6 83 95.2
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 4.1e-39 164.9 93 83.9
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 1.4e-34 149.8 89 83.1
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 1.0e-29 133.7 109 55.0
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 1.5e-28 129.8 113 48.7
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 1.6e-22 109.8 70 70.0
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 3.3e-20 102.1 94 56.4
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 6.4e-16 87.8 44 93.2
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 3.2e-15 85.5 68 60.3
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 3.2e-07 58.9 31 83.9
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 3.2e-07 58.9 116 31.9
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 7.1e-07 57.8 85 38.8
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 1.2e-06 57.0 84 38.1
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 1.6e-06 56.6 81 39.5
MBI14_g02603_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 2.7e-06 55.8 114 34.2
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 3.5e-06 55.5 83 37.3
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 6.0e-06 54.7 114 34.2
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 7.8e-06 54.3 84 33.3


User provided reference genes

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