Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 7.5e-178 627.1 321 100.0
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 3.2e-168 595.1 321 94.1
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.5e-141 506.5 320 78.4
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 1.2e-140 503.4 332 76.5
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 3.0e-134 482.3 330 74.8
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.5e-133 479.2 330 73.3
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 3.3e-133 478.8 330 73.3
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 7.3e-133 477.6 331 75.2
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 6.2e-132 474.6 319 74.9
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 1.4e-131 473.4 321 73.8
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 7.6e-130 467.6 348 71.3
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.4e-129 464.5 320 71.2
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 8.4e-129 464.2 320 71.6
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.4e-128 463.4 328 71.0
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 3.2e-128 462.2 330 73.0
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 5.4e-128 461.5 321 72.0
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 1.2e-127 460.3 328 70.4
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.1e-127 459.5 320 71.2
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 2.7e-127 459.1 329 71.7
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.5e-127 458.8 322 73.3
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 4.6e-127 458.4 320 72.2
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 4.6e-127 458.4 323 71.8
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 6.0e-127 458.0 328 71.0
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.0e-126 457.2 320 71.2
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 2.3e-126 456.1 320 70.9
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 3.9e-126 455.3 325 70.5
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 6.7e-126 454.5 319 70.8
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 6.7e-126 454.5 319 72.7
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 2.5e-125 452.6 330 68.5
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 5.6e-125 451.4 328 72.3
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 7.4e-125 451.1 321 71.0
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.3e-124 450.3 328 68.9
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 1.3e-124 450.3 330 71.2
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 1.3e-124 450.3 330 70.0
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 2.8e-124 449.1 319 70.8
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 3.7e-124 448.7 321 70.1
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 4.8e-124 448.4 349 68.2
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 4.8e-124 448.4 293 76.1
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 4.8e-124 448.4 328 70.1
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.1e-123 447.2 325 69.8
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 1.1e-123 447.2 329 69.9
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.8e-123 446.4 321 69.2
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.4e-123 446.0 326 69.3
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 2.4e-123 446.0 326 68.1
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.0e-123 445.3 326 68.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 6.9e-123 444.5 328 68.0
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.2e-122 443.7 330 69.7
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.5e-122 443.4 326 67.8
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 2.0e-122 443.0 328 69.8
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.4e-122 442.2 330 68.2
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.4e-122 442.2 330 70.0
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 4.5e-122 441.8 330 69.7
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.5e-122 441.8 330 69.7
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 5.8e-122 441.4 328 68.3
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 5.8e-122 441.4 328 68.3
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 7.6e-122 441.0 327 68.2
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 7.6e-122 441.0 330 69.4
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 7.6e-122 441.0 321 68.5
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.3e-121 440.3 330 68.5
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 2.2e-121 439.5 322 68.0
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 2.2e-121 439.5 322 70.2
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 8.4e-121 437.6 322 69.9
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 8.4e-121 437.6 329 68.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.1e-120 437.2 329 67.8
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 1.4e-120 436.8 367 63.5
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 1.9e-120 436.4 326 68.4
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.9e-120 436.4 326 68.1
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.5e-120 436.0 328 67.1
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 5.5e-120 434.9 326 67.8
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 7.1e-120 434.5 322 67.1
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 7.1e-120 434.5 327 66.7
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 9.3e-120 434.1 322 67.4
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 2.1e-119 433.0 329 67.2
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 2.1e-119 433.0 326 67.8
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 4.6e-119 431.8 322 66.1
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 4.6e-119 431.8 358 62.6
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 6.0e-119 431.4 321 66.7
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 6.0e-119 431.4 322 65.8
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.8e-118 429.9 325 66.8
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 2.3e-118 429.5 328 67.7
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 6.7e-118 427.9 321 65.7
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 8.7e-118 427.6 328 67.4
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 8.7e-118 427.6 319 66.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.1e-117 427.2 321 65.7
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 1.1e-117 427.2 320 67.2
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.5e-117 426.8 322 65.8
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 3.3e-117 425.6 321 65.4
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 5.6e-117 424.9 400 59.5
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 2.1e-116 422.9 318 64.5
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 6.2e-116 421.4 329 65.7
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.0e-115 417.5 323 64.4
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.2e-114 417.2 320 65.9
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.2e-114 417.2 319 65.8
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.5e-114 416.8 323 68.1
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 3.4e-114 415.6 327 65.4
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 6.5e-113 411.4 333 62.8
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 8.4e-113 411.0 320 65.9
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.5e-112 409.5 290 73.8
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 3.2e-112 409.1 321 66.0
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.3e-108 397.1 272 73.2
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 4.8e-108 395.2 324 62.3
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 3.1e-107 392.5 322 63.0
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 1.0e-102 377.5 329 59.9
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 5.7e-101 371.7 322 59.3
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 5.7e-101 371.7 328 61.0
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 6.9e-99 364.8 317 60.6
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 7.9e-95 351.3 322 59.6
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 1.4e-91 340.5 310 57.7
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 5.3e-91 338.6 325 57.2
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 5.3e-91 338.6 321 56.4
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.4e-88 330.5 310 56.8
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.8e-86 323.6 327 57.2
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 2.3e-86 323.2 324 55.6
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 8.2e-84 314.7 314 55.1
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 6.5e-81 305.1 275 60.4
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 1.0e-78 297.7 318 49.4
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 2.2e-73 280.0 177 79.1
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 1.4e-70 270.8 319 44.8
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 9.8e-69 264.6 194 67.5
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.8e-67 260.4 265 55.1
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.5e-66 256.1 316 48.1
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 1.4e-62 244.2 278 44.6
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.5e-61 240.7 323 45.2
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.5e-61 240.7 216 58.8
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.6e-61 240.0 197 62.4
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.8e-59 233.8 187 64.2
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 2.0e-58 230.3 286 43.0
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.2e-55 221.1 177 61.6
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 1.1e-51 208.0 142 70.4
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 9.2e-51 204.9 133 76.7
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 1.1e-48 198.0 131 71.0
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 4.3e-48 196.1 131 76.3
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 7.3e-48 195.3 139 69.1
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 2.1e-47 193.7 157 62.4
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 1.1e-43 181.4 134 71.6
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 7.8e-42 175.3 240 40.0
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 1.9e-40 170.6 143 60.1
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 5.6e-40 169.1 267 39.3
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.8e-39 166.8 179 52.0
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 4.7e-39 166.0 283 35.0
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 2.9e-36 156.8 117 64.1
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.1e-35 154.8 115 68.7
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 1.2e-34 151.4 197 44.7
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 4.6e-34 149.4 139 56.1
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.0e-34 149.1 138 57.2
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.0e-33 146.7 153 49.0
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 5.6e-32 142.5 135 52.6
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 2.2e-28 130.6 81 72.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 2.2e-28 130.6 176 41.5
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.4e-28 129.0 127 49.6
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 3.5e-26 123.2 131 47.3
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 5.1e-25 119.4 113 55.8
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 6.9e-22 109.0 188 41.0
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 1.3e-20 104.8 68 75.0
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 1.5e-16 91.3 89 53.9
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 1.5e-16 91.3 89 53.9
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 7.3e-16 89.0 89 53.9
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 5.3e-14 82.8 117 45.3
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 9.0e-14 82.0 62 72.6
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 3.9e-09 66.6 61 55.7
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 2.5e-08 63.9 53 60.4


User provided reference genes

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