Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 2.8e-255 884.8 451 100.0
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 1.9e-219 765.8 452 87.4
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 7.0e-214 747.3 451 84.0
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 8.8e-209 730.3 454 82.2
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 9.8e-208 726.9 451 82.0
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 8.6e-204 713.8 453 79.9
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 1.3e-199 699.9 468 76.1
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 1.3e-199 699.9 468 76.1
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.3e-199 699.9 445 80.2
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 4.0e-193 678.3 440 80.0
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 3.9e-188 661.8 451 75.2
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 3.4e-184 648.7 447 73.8
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 6.4e-183 644.4 451 74.1
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 6.0e-181 637.9 446 73.8
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 8.6e-180 634.0 445 71.9
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.1e-179 633.6 446 71.7
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.5e-179 633.3 446 72.0
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 1.5e-179 633.3 444 72.5
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 7.3e-179 630.9 446 72.0
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.6e-178 628.6 454 71.6
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 6.2e-178 627.9 457 70.9
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.8e-177 626.3 434 74.7
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.0e-177 625.2 454 71.1
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-176 622.9 447 70.9
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.8e-176 621.3 454 70.7
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 7.5e-176 620.9 445 70.8
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 2.2e-175 619.4 446 71.1
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.2e-175 619.4 454 70.5
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.9e-174 616.3 454 70.7
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 3.2e-174 615.5 451 70.1
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 7.1e-174 614.4 454 70.3
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 9.2e-174 614.0 445 69.9
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.3e-172 610.1 445 70.6
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 8.6e-172 607.4 448 69.4
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 5.6e-171 604.7 452 70.8
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 7.3e-171 604.4 446 68.6
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 4.7e-170 601.7 458 70.1
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 1.1e-169 600.5 447 68.9
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 1.4e-169 600.1 439 68.8
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 4.0e-169 598.6 446 69.7
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 8.9e-169 597.4 452 67.9
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 2.9e-167 592.4 448 68.3
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 4.9e-167 591.7 458 68.1
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 8.4e-167 590.9 460 67.2
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.4e-166 590.1 432 71.1
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 4.1e-166 588.6 446 67.0
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 4.1e-166 588.6 452 68.8
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 2.7e-165 585.9 439 67.7
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 3.0e-164 582.4 450 66.4
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 6.6e-164 581.3 432 69.4
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 1.1e-163 580.5 446 65.7
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 2.5e-163 579.3 445 67.9
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 5.6e-163 578.2 444 65.5
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 5.6e-163 578.2 448 65.0
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 3.6e-162 575.5 444 65.3
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 6.2e-162 574.7 444 67.3
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 1.2e-160 570.5 454 64.3
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 4.4e-160 568.5 436 66.5
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 7.6e-160 567.8 509 61.7
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 9.9e-160 567.4 446 67.5
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 8.4e-159 564.3 444 65.5
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 1.1e-158 563.9 444 64.2
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 9.3e-158 560.8 445 66.1
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 1.6e-157 560.1 436 65.6
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.6e-157 560.1 450 66.7
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 4.6e-157 558.5 448 65.4
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 1.0e-156 557.4 450 65.3
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 1.3e-156 557.0 444 64.4
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 3.0e-156 555.8 439 65.4
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 5.1e-156 555.1 444 64.6
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.5e-155 553.5 448 64.1
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.6e-155 551.6 446 63.9
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 2.1e-154 549.7 436 64.9
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 3.6e-154 548.9 443 63.4
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 5.3e-153 545.0 436 65.1
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 1.2e-152 543.9 436 64.4
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 7.6e-152 541.2 436 64.9
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 9.9e-152 540.8 404 68.1
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 2.4e-150 536.2 540 56.3
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 8.7e-148 527.7 447 62.4
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 3.3e-147 525.8 466 60.7
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 2.8e-146 522.7 445 62.5
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 9.9e-144 514.2 403 67.2
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.3e-143 513.8 441 63.0
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 1.7e-143 513.5 438 62.8
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 6.4e-143 511.5 463 60.7
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 2.4e-142 509.6 447 60.6
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 4.6e-141 505.4 458 61.1
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 2.4e-137 493.0 416 63.9
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 9.0e-137 491.1 454 60.1
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.3e-135 487.3 443 58.5
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 1.7e-135 486.9 273 88.3
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 6.7e-132 474.9 423 60.8
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 1.5e-131 473.8 454 58.1
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 5.7e-131 471.9 320 78.8
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 7.4e-131 471.5 355 68.5
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 2.2e-130 469.9 423 59.8
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.9e-126 456.8 451 57.2
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.5e-126 456.4 361 64.3
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 7.4e-123 444.9 446 57.4
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 8.5e-119 431.4 264 80.3
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 4.7e-117 425.6 439 51.3
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 6.7e-116 421.8 250 80.8
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.8e-114 416.4 249 81.9
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 1.1e-113 414.5 326 65.6
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 7.0e-113 411.8 428 54.0
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 6.5e-111 405.2 408 54.4
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 8.5e-111 404.8 431 52.7
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 7.0e-105 385.2 224 83.5
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 2.3e-100 370.2 415 51.6
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 7.5e-99 365.2 325 61.5
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 8.0e-93 345.1 487 42.9
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 4.0e-92 342.8 287 64.8
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 1.1e-89 334.7 370 52.4
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 8.0e-85 318.5 329 58.4
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 4.4e-75 286.2 281 56.2
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.9e-70 270.8 291 51.5
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 4.0e-68 263.1 254 54.7
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 3.2e-65 253.4 247 57.9
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 7.5e-59 232.3 210 61.0
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 5.1e-55 219.5 440 34.1
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.1e-54 218.4 216 56.0
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 4.0e-52 209.9 401 37.7
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 6.4e-50 202.6 260 44.6
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 4.6e-48 196.4 207 52.2
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 2.3e-47 194.1 136 64.7
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 5.6e-46 189.5 255 42.4
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 1.4e-44 184.9 98 94.9
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 5.8e-43 179.5 106 83.0
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.4e-41 174.1 86 91.9
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.3e-39 168.3 161 53.4
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 5.8e-35 152.9 74 95.9
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 2.1e-29 134.4 87 71.3
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.4e-28 131.7 86 74.4
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 4.0e-28 130.2 87 66.7
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 8.4e-26 122.5 260 31.2
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 4.6e-24 116.7 67 85.1
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.4e-20 105.1 188 39.9
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 3.4e-19 100.5 92 52.2
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 6.1e-16 89.7 69 68.1
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 8.7e-15 85.9 188 35.1
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.2e-13 81.3 59 64.4
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-12 77.4 59 64.4
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 5.3e-12 76.6 81 54.3
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 2.5e-09 67.8 37 91.9
Gorai.004G275700 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.1e-06 58.9 64 53.1


User provided reference genes

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