Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1885.9 957 100.0
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1803.5 957 96.0
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1762.3 960 94.0
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1761.9 959 93.8
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1710.3 959 89.6
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1694.5 959 89.3
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1693.3 958 89.4
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1691.4 957 89.0
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1684.8 960 88.4
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1671.0 960 88.2
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1634.0 960 86.8
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1629.4 959 85.5
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1612.4 960 84.8
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1611.3 957 84.4
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1609.7 965 85.8
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1607.0 963 85.8
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1591.6 962 83.8
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1591.6 961 83.1
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1591.2 960 84.1
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1590.1 955 83.4
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1588.5 912 84.4
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1588.5 959 83.2
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1585.1 959 83.2
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1584.7 984 82.1
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1580.1 957 83.0
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1578.1 965 83.0
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1577.0 958 83.3
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1575.8 912 84.2
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1575.5 960 82.8
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1573.9 960 83.4
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1572.4 958 83.3
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1568.5 962 81.7
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1568.1 961 83.1
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1568.1 968 82.3
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1564.7 958 82.6
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1564.3 912 83.9
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1563.9 963 81.9
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1562.0 958 82.5
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1560.0 956 82.3
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1558.1 964 82.8
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1557.7 960 82.1
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1557.0 960 82.1
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1555.0 954 82.3
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1554.7 960 81.9
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1554.3 957 81.7
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1553.1 957 81.5
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1550.8 958 82.3
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1550.8 960 82.0
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1548.1 957 81.7
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1546.9 957 81.0
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1543.5 957 80.9
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1540.8 959 81.9
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1539.6 960 82.5
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1535.4 912 81.7
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1528.5 968 81.9
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1528.5 961 79.4
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1525.0 960 80.6
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1523.8 959 81.6
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1523.8 965 78.8
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1523.1 958 79.5
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1521.1 966 80.3
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1515.7 959 79.4
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1512.7 956 79.1
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1511.1 963 78.3
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1509.2 920 81.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1508.0 975 77.6
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1506.5 955 77.6
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1501.1 955 77.4
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1496.1 961 78.9
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1495.3 963 79.0
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1494.6 960 78.9
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1493.4 915 78.6
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1490.7 960 78.4
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1489.9 987 76.1
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1487.6 957 78.4
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1473.4 980 75.7
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1468.0 923 78.8
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1464.1 919 76.0
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1459.9 964 77.2
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1458.7 1182 66.0
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1456.4 980 76.2
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1455.7 957 77.5
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1453.7 964 77.0
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1453.3 969 75.6
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1452.6 964 76.9
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1449.5 984 75.9
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1449.5 984 75.9
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1448.3 969 76.5
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1448.0 962 75.7
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1447.6 968 78.6
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1443.7 966 75.7
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1441.4 975 75.4
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1441.4 969 75.2
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1435.6 978 74.6
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1434.1 957 77.1
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1432.5 961 74.3
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1431.4 919 76.6
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1429.8 957 74.2
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1423.7 908 78.6
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1409.8 829 82.3
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1404.4 966 71.5
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1394.8 956 72.2
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1387.9 957 72.7
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1386.3 824 80.8
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1379.0 921 74.3
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1346.6 918 73.1
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1338.2 912 71.2
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1324.7 904 73.2
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1323.9 959 70.1
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1309.3 784 83.7
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1270.8 786 79.9
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1242.6 923 66.2
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1227.2 726 82.1
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1187.2 784 72.7
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1167.9 687 83.8
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1165.2 942 63.4
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1145.2 987 60.7
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1133.6 981 58.8
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1121.3 956 61.5
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1121.3 966 59.3
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1082.4 719 78.3
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.3e-294 1016.5 660 77.9
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.2e-286 989.2 673 78.5
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.7e-284 982.2 788 61.2
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 6.5e-270 934.5 590 79.8
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.2e-261 904.4 572 77.6
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 1.9e-248 863.2 523 81.8
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.9e-237 826.6 601 71.2
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 7.6e-226 788.1 487 79.1
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 1.1e-211 741.1 441 86.6
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.9e-189 667.2 386 84.5
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.7e-181 639.0 403 81.6
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 6.1e-175 619.0 1033 37.9
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 1.9e-152 544.3 416 64.9
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 3.4e-149 533.5 415 63.6
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 5.4e-139 499.6 820 37.2
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 4.7e-127 459.9 480 55.6
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.5e-114 417.2 252 79.0
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 1.4e-110 405.2 223 84.8
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 8.4e-108 396.0 279 70.6
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.6e-106 391.7 1052 28.1
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.6e-105 386.3 867 33.1
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.8e-97 361.7 250 72.4
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.3e-95 355.5 253 68.8
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.3e-95 355.5 253 68.8
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.8e-89 335.1 286 63.6
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 2.1e-87 328.2 365 43.3
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 8.2e-55 219.9 148 68.9
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.0e-53 215.3 174 53.4
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 1.1e-51 209.5 149 65.8
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 1.1e-51 209.5 149 65.8
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.9e-51 208.8 240 50.8
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 1.2e-48 199.5 139 66.9
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 3.1e-46 191.4 174 56.3
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.1e-46 191.4 118 78.0
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 2.3e-41 175.3 141 56.0
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.2e-40 172.9 101 81.2
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 7.5e-40 170.2 99 81.8
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 2.4e-38 165.2 111 71.2
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 4.5e-37 161.0 131 64.1
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.0e-33 149.8 76 88.2
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.0e-33 148.3 76 86.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.0e-33 147.9 75 89.3
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.8e-33 147.1 76 86.8
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.7e-31 142.5 82 79.3
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.7e-31 142.5 88 79.5
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.8e-31 141.7 74 86.5
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 6.3e-31 140.6 96 74.0
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 1.8e-30 139.0 151 50.3
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.8e-30 139.0 112 58.9
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 2.9e-28 131.7 128 52.3
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 6.6e-28 130.6 121 55.4
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 2.1e-26 125.6 78 76.9
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 8.9e-25 120.2 65 86.2
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 9.8e-24 116.7 143 52.4
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 2.5e-19 102.1 289 26.0
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 2.6e-16 92.0 82 58.5
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 7.3e-11 73.9 133 41.4
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 9.5e-11 73.6 56 62.5
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 1.4e-09 69.7 177 35.0
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 3.4e-08 65.1 84 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.3e-07 63.2 42 64.3
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 3.7e-07 61.6 45 53.3


User provided reference genes

Program Settings