Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 1.2e-272 942.6 476 100.0
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 2.4e-241 838.6 464 92.5
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 3.2e-225 785.0 473 85.6
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 1.5e-211 739.6 470 80.4
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.5e-201 704.5 464 77.2
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.5e-201 704.5 464 77.2
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 2.0e-195 686.0 465 76.6
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 1.1e-190 670.2 466 75.5
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 2.2e-186 656.0 459 74.9
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.6e-184 649.8 477 72.3
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 3.0e-183 645.6 479 71.6
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 2.7e-171 605.9 394 77.9
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 8.5e-170 600.9 437 69.6
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 6.1e-168 594.7 433 69.5
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 3.1e-164 582.4 441 68.0
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 7.0e-164 581.3 428 68.2
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 4.7e-160 568.5 454 63.7
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.4e-159 567.0 445 64.3
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 5.2e-159 565.1 464 63.4
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 2.6e-158 562.8 460 62.2
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 2.8e-157 559.3 469 61.8
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 4.9e-157 558.5 447 64.0
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 4.9e-157 558.5 447 64.0
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 6.3e-157 558.1 476 61.8
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 5.4e-156 555.1 435 65.1
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 9.2e-156 554.3 434 65.9
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 2.7e-155 552.7 449 65.0
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 1.0e-154 550.8 419 66.1
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 8.6e-154 547.7 438 64.8
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 2.5e-153 546.2 462 61.9
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 2.5e-153 546.2 469 61.6
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 4.3e-153 545.4 484 60.5
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 2.1e-152 543.1 446 63.5
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.0e-151 540.8 435 64.1
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 6.8e-151 538.1 456 63.8
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 5.7e-150 535.0 415 67.2
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 1.7e-149 533.5 457 60.6
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 2.9e-149 532.7 472 60.4
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 8.3e-149 531.2 544 55.1
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 7.0e-148 528.1 458 60.3
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 2.0e-147 526.6 422 64.7
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 3.5e-147 525.8 417 65.2
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 3.5e-147 525.8 405 66.9
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 3.9e-146 522.3 414 64.5
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 6.6e-146 521.5 467 60.0
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 9.5e-145 517.7 438 60.7
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 9.5e-145 517.7 459 60.1
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 2.1e-144 516.5 430 62.6
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 2.8e-144 516.2 449 61.0
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 3.6e-144 515.8 434 61.1
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 3.6e-144 515.8 445 60.9
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 1.0e-143 514.2 441 62.1
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 1.4e-143 513.8 438 60.3
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 1.8e-143 513.5 424 61.1
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 1.8e-143 513.5 459 60.3
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 3.1e-143 512.7 459 60.1
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 4.0e-143 512.3 428 62.1
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 4.0e-143 512.3 430 62.3
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 1.5e-142 510.4 443 58.9
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 1.5e-142 510.4 461 57.9
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 1.5e-142 510.4 464 59.7
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 5.8e-142 508.4 456 60.1
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 5.8e-142 508.4 463 58.7
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 1.3e-141 507.3 430 61.4
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 1.3e-141 507.3 448 58.7
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 1.3e-141 507.3 477 58.7
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 2.4e-140 503.1 430 61.6
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 9.2e-140 501.1 444 59.0
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 3.5e-139 499.2 419 61.6
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 6.0e-139 498.4 477 56.8
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 1.3e-138 497.3 418 62.9
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 1.7e-138 496.9 440 58.4
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 3.0e-138 496.1 443 60.0
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 3.9e-138 495.7 428 60.7
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 2.5e-137 493.0 490 53.7
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 7.3e-137 491.5 476 56.1
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 2.1e-136 490.0 396 61.4
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 3.6e-136 489.2 423 61.0
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 3.4e-134 482.6 474 56.3
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 5.8e-134 481.9 430 59.1
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 5.8e-134 481.9 422 60.4
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 5.8e-134 481.9 441 58.3
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.3e-133 480.7 468 55.3
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.3e-133 480.7 468 55.3
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 1.1e-132 477.6 438 57.3
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 1.4e-132 477.2 435 56.3
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 4.7e-128 462.2 394 61.9
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 1.4e-127 460.7 387 61.5
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 1.4e-127 460.7 479 52.4
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 1.5e-126 457.2 424 58.0
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 3.4e-126 456.1 418 56.5
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 3.8e-125 452.6 438 55.9
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 8.6e-122 441.4 457 52.5
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 2.5e-121 439.9 475 49.9
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.1e-119 434.5 367 62.4
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 1.5e-113 414.1 566 44.5
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 6.2e-112 408.7 354 59.3
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 8.7e-106 388.3 463 47.5
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 6.9e-103 378.6 321 62.0
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 1.7e-101 374.0 444 48.4
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 1.4e-100 370.9 527 41.6
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 6.7e-98 362.1 314 60.8
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 1.9e-97 360.5 454 46.9
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 2.4e-95 353.6 316 55.7
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 9.7e-81 305.1 277 58.5
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 1.2e-78 298.1 295 54.6
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 1.9e-76 290.8 248 60.1
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 1.4e-68 264.6 404 41.1
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 3.2e-68 263.5 516 36.2
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 5.2e-58 229.6 287 47.0
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.6e-51 208.0 126 77.8
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 1.6e-51 208.0 126 77.8
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 4.8e-48 196.4 186 53.2
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 4.1e-47 193.4 117 85.5
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 5.7e-41 172.9 284 38.4
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 2.4e-39 167.5 115 73.9
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 1.1e-36 158.7 132 60.6
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 9.8e-33 145.6 191 45.5
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 2.9e-32 144.1 140 54.3
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 7.8e-30 136.0 129 59.7
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-21 108.2 63 77.8
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 5.2e-18 96.7 130 44.6
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 3.6e-11 73.9 140 35.7
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 4.9e-08 63.5 193 29.0
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 1.4e-07 62.0 193 28.0
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 1.9e-07 61.6 193 28.0
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 1.9e-07 61.6 193 28.0
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 1.9e-07 61.6 193 27.5
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 2.4e-07 61.2 144 31.2
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 2.4e-07 61.2 146 32.9
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.2e-07 60.8 197 28.4
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 3.2e-07 60.8 204 26.5
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 4.1e-07 60.5 193 27.5
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 4.1e-07 60.5 290 25.9
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 5.4e-07 60.1 196 28.6
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 5.4e-07 60.1 196 28.6
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 5.4e-07 60.1 196 28.6
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 5.4e-07 60.1 192 27.1
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 5.4e-07 60.1 193 27.5
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 7.1e-07 59.7 187 28.9
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 7.1e-07 59.7 192 27.1
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 7.1e-07 59.7 192 27.1
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 7.1e-07 59.7 188 30.3
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 1.2e-06 58.9 193 28.5
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 1.6e-06 58.5 179 25.7
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 1.6e-06 58.5 195 27.7
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.1e-06 58.2 204 26.5
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 2.1e-06 58.2 136 33.1
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 2.1e-06 58.2 130 33.1
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.1e-06 58.2 193 26.9
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 2.1e-06 58.2 188 27.7
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 2.7e-06 57.8 193 27.5
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.7e-06 57.8 216 27.3
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 3.5e-06 57.4 156 30.8
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 4.6e-06 57.0 193 26.4
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 6.0e-06 56.6 197 26.9
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 6.0e-06 56.6 155 28.4
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 7.8e-06 56.2 193 26.9
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 7.8e-06 56.2 145 31.7
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 7.8e-06 56.2 193 28.0
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 7.8e-06 56.2 196 27.0
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 7.8e-06 56.2 191 26.7
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 7.8e-06 56.2 196 26.5


User provided reference genes

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