Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 2179.4 1196 100.0
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 2096.6 1196 94.8
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 2051.6 1196 93.8
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1926.0 1182 89.0
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1926.0 1203 85.7
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1902.9 1103 93.0
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1898.2 1209 85.3
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1892.5 1216 87.1
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1874.4 1205 86.7
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1861.3 1201 85.8
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1829.3 1187 85.5
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1825.1 1180 85.7
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1785.8 1203 81.0
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1755.7 1204 78.3
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1751.5 1203 80.0
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1751.1 1176 79.8
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1749.6 1202 79.5
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1745.7 1205 79.2
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1743.8 1205 79.9
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1743.4 1205 79.7
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1742.6 1205 80.1
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1741.9 1200 79.6
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1731.1 1204 80.3
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1719.9 1204 79.0
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1718.4 1203 78.5
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1713.0 1203 77.5
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1712.6 1204 78.2
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1710.3 1207 78.8
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1709.1 1204 77.4
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1707.2 1209 79.1
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1704.1 1205 79.3
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1703.3 1204 78.6
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1701.4 1252 76.0
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1697.6 1262 75.4
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1694.9 1203 78.1
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1692.9 1203 77.3
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1680.6 1207 78.3
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1674.4 1211 77.8
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1671.0 1205 76.8
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1665.2 1206 75.0
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1665.2 1212 75.3
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1655.2 1205 76.3
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1645.6 1204 75.7
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1640.2 1157 76.6
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1640.2 1199 75.1
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1639.8 1225 75.5
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1637.9 1207 73.8
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1635.9 1197 73.1
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1630.9 1207 74.6
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1629.4 1222 73.2
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1627.8 1191 75.1
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1625.1 1200 75.6
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1624.0 1213 73.1
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1622.1 1203 74.8
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1617.8 1207 74.1
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1615.9 1146 78.2
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1602.0 1232 73.3
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1601.6 1196 73.5
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1601.6 1200 72.7
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1595.5 1209 72.8
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1593.2 1205 72.4
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1588.5 1208 73.3
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1584.3 1198 71.4
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1576.6 1235 70.0
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1574.7 1076 80.8
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1570.1 1180 73.6
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1565.1 1208 72.2
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1560.4 1206 71.1
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1560.4 1163 73.8
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1548.9 1198 69.7
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1547.7 1406 65.0
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1541.6 1199 71.6
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1541.2 1198 69.6
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1541.2 1198 69.6
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1538.5 1198 72.1
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1532.7 1182 71.7
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1528.1 1198 68.8
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1527.7 1183 72.8
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1525.0 1202 70.4
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1524.6 1203 72.9
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1522.7 1208 70.0
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1521.9 1209 69.1
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1521.1 1200 70.8
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1519.2 1193 70.2
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1517.3 1205 70.5
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1514.2 1207 70.4
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1514.2 1200 70.2
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1512.7 1203 70.6
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1506.5 1219 70.1
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1502.6 1177 70.9
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1477.6 1303 64.7
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1468.8 1203 69.0
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1447.2 1205 67.4
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1417.5 1190 67.1
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1404.8 1194 64.9
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1400.2 1171 69.3
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1377.8 1178 64.6
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1371.3 934 79.3
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1370.9 1235 63.8
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1365.9 1181 64.9
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1357.0 883 78.8
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1345.1 1244 62.6
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1298.1 875 79.2
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1193.7 814 79.1
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1192.9 844 75.9
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 0.0e+00 1152.1 977 70.4
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1144.0 1205 54.1
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1091.3 792 72.3
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1081.2 760 77.5
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.9e-306 1056.2 905 69.5
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 8.7e-288 994.2 669 76.8
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.9e-271 939.9 928 61.9
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.0e-267 927.5 810 64.8
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.0e-203 713.4 636 60.4
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 1.7e-187 661.0 536 64.2
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 1.1e-170 605.1 960 41.4
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.1e-170 605.1 483 69.8
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.3e-155 554.3 377 76.9
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 4.3e-154 550.1 294 90.8
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 1.3e-150 538.5 445 67.6
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.1e-128 465.7 368 75.0
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.5e-122 445.3 380 67.9
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 6.3e-121 439.9 1169 32.1
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.9e-118 431.0 838 37.7
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 9.4e-117 426.0 237 85.7
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 6.6e-102 376.7 313 66.8
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 2.1e-100 371.7 559 42.9
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 1.5e-93 349.0 1264 27.7
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 1.1e-88 332.8 181 89.5
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 4.1e-88 330.9 181 87.8
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 4.1e-88 330.9 181 87.8
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 6.8e-83 313.5 174 85.6
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.6e-82 311.6 215 74.9
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.4e-82 310.8 215 74.9
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 3.0e-78 298.1 384 53.4
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 4.0e-75 287.7 343 55.4
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 7.6e-74 283.5 357 56.6
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 2.1e-71 275.4 224 63.8
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 3.4e-66 258.1 395 44.3
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.7e-65 255.8 143 92.3
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 9.9e-58 229.9 339 48.7
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.4e-56 226.1 164 70.1
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 7.1e-56 223.8 202 69.3
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 1.2e-55 223.0 214 63.6
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 2.1e-55 222.2 233 60.9
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-53 216.5 154 72.1
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 1.4e-51 209.5 322 41.0
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 8.4e-49 200.3 327 41.0
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.5e-47 194.9 138 69.6
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 8.7e-38 163.7 96 84.4
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.3e-36 159.8 154 59.1
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 8.2e-36 157.1 120 62.5
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.5e-34 152.9 104 75.0
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 2.0e-34 152.5 83 90.4
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 1.6e-31 142.9 103 77.7
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.1e-31 142.5 112 65.2
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 7.9e-31 140.6 123 62.6
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 9.7e-29 133.7 180 53.9
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 1.5e-26 126.3 87 70.1
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 1.5e-26 126.3 72 86.1
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.7e-25 122.9 75 76.0
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 6.7e-22 110.9 65 87.7
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.0e-21 109.4 113 57.5
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 9.1e-19 100.5 59 89.8
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.2e-18 100.1 69 69.6
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 3.5e-18 98.6 57 80.7
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 7.7e-18 97.4 57 78.9
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 1.0e-17 97.1 85 55.3
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-16 92.8 77 59.7
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 3.2e-16 92.0 97 59.8
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 7.2e-16 90.9 126 44.4
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 8.0e-15 87.4 56 71.4
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 1.1e-11 77.0 46 84.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 2.2e-09 69.3 66 57.6
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 1.4e-06 60.1 83 59.0
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 1.4e-06 60.1 146 34.2
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 1.4e-06 60.1 39 61.5
TPR.G23196 Trifolium pratense HOM05D000141 ORTHO05D001311 2.3e-06 59.3 33 84.8


User provided reference genes

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