Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 4.3e-148 528.1 288 100.0
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 3.5e-134 481.9 286 91.6
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 1.4e-130 469.9 288 86.8
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 1.3e-125 453.4 288 85.4
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 1.5e-121 439.9 288 83.0
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 3.4e-121 438.7 288 81.6
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 3.4e-121 438.7 288 80.9
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 7.6e-121 437.6 288 80.9
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 9.2e-119 430.6 290 81.0
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 2.3e-117 426.0 286 81.1
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 1.4e-114 416.8 288 79.9
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 2.6e-113 412.5 289 79.2
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 4.4e-113 411.8 288 77.8
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 8.4e-112 407.5 288 76.7
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 3.2e-111 405.6 288 74.3
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 5.6e-108 394.8 288 77.1
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.8e-107 392.5 288 76.0
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 3.6e-107 392.1 288 76.0
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 1.1e-106 390.6 288 75.7
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.1e-106 390.6 286 75.9
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.1e-106 390.6 288 73.6
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 6.9e-106 387.9 268 75.4
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 9.0e-106 387.5 288 75.3
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 1.3e-104 383.6 288 71.5
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.9e-104 382.5 288 72.9
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 3.8e-104 382.1 288 73.6
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.8e-104 382.1 290 72.1
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.8e-104 382.1 290 72.1
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 4.9e-104 381.7 288 74.3
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.4e-104 381.3 288 72.2
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 8.4e-104 380.9 290 71.7
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 8.4e-104 380.9 288 72.9
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 1.4e-103 380.2 288 72.9
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 9.3e-103 377.5 288 73.3
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.5e-102 375.6 287 72.8
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 1.3e-101 373.6 289 72.3
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.7e-101 373.2 290 73.1
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.7e-101 373.2 287 72.8
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.9e-101 372.1 288 70.5
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 5.1e-101 371.7 288 73.6
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.5e-100 369.4 288 69.8
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 4.3e-100 368.6 286 70.3
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 4.3e-100 368.6 288 72.6
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 4.8e-99 365.2 289 69.9
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 4.8e-99 365.2 288 72.9
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 1.1e-98 364.0 287 71.1
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.8e-98 363.2 289 70.9
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 2.4e-98 362.8 281 72.6
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 5.8e-97 358.2 288 68.4
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 5.8e-97 358.2 288 68.4
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 9.9e-97 357.5 289 69.6
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 9.9e-97 357.5 289 69.2
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.3e-96 357.1 288 69.4
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 2.2e-96 356.3 289 68.9
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 2.2e-96 356.3 289 69.9
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 2.2e-96 356.3 289 69.6
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 3.8e-96 355.5 316 67.4
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 6.4e-96 354.8 288 68.1
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.1e-95 354.0 302 65.6
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 1.1e-95 354.0 289 69.9
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.4e-95 353.6 305 65.6
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.6e-94 350.1 289 68.9
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 2.1e-94 349.7 287 69.3
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 3.5e-94 349.0 286 67.8
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 1.3e-93 347.1 266 71.8
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 3.0e-93 345.9 239 75.7
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 6.7e-93 344.7 307 64.5
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 8.7e-93 344.4 239 75.3
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 1.1e-92 344.0 249 76.7
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 1.9e-92 343.2 290 68.6
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 1.9e-92 343.2 267 69.7
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 2.5e-92 342.8 250 76.4
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 3.3e-92 342.4 254 75.6
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 3.3e-92 342.4 254 75.6
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 3.3e-92 342.4 282 67.4
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 7.4e-92 341.3 288 65.6
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-91 340.5 254 75.2
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.3e-91 340.5 254 75.2
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 1.6e-91 340.1 250 73.6
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 2.1e-91 339.7 250 73.6
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 2.1e-91 339.7 250 73.6
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 3.7e-91 339.0 250 76.0
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 3.7e-91 339.0 250 75.6
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 4.8e-91 338.6 239 75.3
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 6.2e-91 338.2 250 76.0
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 6.2e-91 338.2 266 69.2
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 8.1e-91 337.8 250 72.8
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 8.1e-91 337.8 250 75.6
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 8.1e-91 337.8 239 74.9
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 8.1e-91 337.8 274 67.5
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 1.8e-90 336.7 245 73.5
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 3.1e-90 335.9 288 66.0
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 3.1e-90 335.9 296 66.9
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 5.3e-90 335.1 289 69.2
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 9.0e-90 334.3 239 74.1
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 2.6e-89 332.8 288 67.4
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 3.4e-89 332.4 240 74.2
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 3.8e-88 328.9 187 95.7
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 1.4e-87 327.0 287 64.5
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 4.2e-87 325.5 288 65.3
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 9.3e-87 324.3 286 68.2
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.8e-85 320.1 251 70.5
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 2.3e-85 319.7 239 71.5
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 1.5e-84 317.0 288 64.2
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 2.5e-84 316.2 269 67.7
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 2.3e-77 293.1 237 68.8
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 9.7e-76 287.7 260 63.5
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 4.8e-75 285.4 211 76.3
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.3e-75 285.0 261 64.4
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 5.3e-74 282.0 288 58.0
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 5.5e-71 271.9 287 56.4
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 9.7e-68 261.2 153 89.5
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.8e-67 259.6 265 59.2
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.4e-66 256.5 286 55.9
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.4e-66 256.5 293 54.6
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 5.3e-66 255.4 153 87.6
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 2.3e-61 240.0 288 49.7
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 5.5e-55 218.8 229 59.8
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 8.0e-54 214.9 196 56.6
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.4e-53 214.2 256 50.0
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 4.4e-52 209.1 170 64.7
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 7.0e-50 201.8 125 82.4
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 5.5e-47 192.2 205 55.6
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 8.0e-46 188.3 153 66.7
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 4.0e-45 186.0 153 65.4
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 5.9e-41 172.2 170 57.6
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.2e-39 166.0 170 56.5
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.8e-38 163.3 170 54.7
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 3.1e-34 149.8 240 38.3
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.0e-32 142.5 105 67.6
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 8.0e-30 135.2 289 37.0
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.8e-29 134.0 67 94.0
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 7.0e-26 122.1 75 89.3
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 1.0e-24 118.2 141 53.9
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 6.8e-21 105.5 137 51.1
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 7.0e-18 95.5 73 63.0
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 3.9e-16 89.7 137 48.2
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 4.3e-15 86.3 137 47.4
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 9.8e-12 75.1 42 83.3
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 2.7e-09 67.0 173 31.8
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 3.5e-09 66.6 100 48.0
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 8.1e-06 55.5 39 69.2


User provided reference genes

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