Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 6.0e-246 854.0 514 100.0
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 8.2e-243 843.6 514 99.0
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 1.9e-239 832.4 504 99.4
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 7.9e-238 827.0 513 97.1
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 6.7e-237 823.9 514 96.9
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 6.7e-237 823.9 514 96.5
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 5.7e-236 820.8 514 97.5
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 2.2e-232 808.9 514 93.2
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 5.0e-232 807.7 514 89.5
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.1e-231 806.6 514 94.4
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 2.5e-231 805.4 514 93.6
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 5.5e-231 804.3 514 92.6
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 6.1e-230 800.8 514 91.6
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 6.1e-230 800.8 514 92.4
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 7.9e-230 800.4 512 94.1
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 1.4e-229 799.7 512 91.6
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 3.9e-229 798.1 514 92.6
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 5.1e-229 797.7 514 92.2
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 6.7e-229 797.3 513 92.6
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 8.8e-229 797.0 514 90.9
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 2.0e-228 795.8 511 92.4
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 4.3e-228 794.7 511 92.4
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.7e-228 794.3 514 91.6
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 2.8e-227 792.0 514 94.4
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 2.8e-227 792.0 511 88.3
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 3.7e-227 791.6 511 93.5
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 6.3e-227 790.8 510 88.8
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 8.2e-227 790.4 514 86.4
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.4e-226 789.6 513 92.0
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.4e-226 789.6 514 90.7
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 1.8e-226 789.3 512 92.0
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 1.8e-226 789.3 509 87.8
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 2.4e-226 788.9 514 87.9
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 4.1e-226 788.1 514 90.7
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 4.1e-226 788.1 510 87.8
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 9.1e-226 786.9 510 91.2
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 2.6e-225 785.4 510 87.3
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 2.6e-225 785.4 514 91.8
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 2.6e-225 785.4 512 92.0
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 3.4e-225 785.0 514 90.9
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 3.4e-225 785.0 514 91.6
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 4.5e-225 784.6 514 91.1
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 7.7e-225 783.9 513 90.4
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.3e-224 783.1 514 90.9
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 1.7e-224 782.7 511 91.8
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 2.9e-224 781.9 510 91.0
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 2.9e-224 781.9 514 91.2
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 3.8e-224 781.6 514 89.7
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 1.1e-223 780.0 512 91.2
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.4e-223 779.6 536 88.6
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 3.2e-223 778.5 513 91.2
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 4.2e-223 778.1 514 88.9
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 2.1e-222 775.8 514 91.4
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.0e-221 773.5 504 92.5
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 1.4e-221 773.1 514 89.7
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.8e-221 772.7 513 91.0
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 1.8e-221 772.7 511 89.2
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.8e-221 772.7 514 88.1
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 3.0e-221 771.9 514 84.6
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 1.5e-220 769.6 512 92.0
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 2.6e-220 768.8 513 88.9
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 3.3e-220 768.5 513 85.4
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 3.3e-220 768.5 514 85.0
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.7e-219 766.1 513 87.5
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 6.3e-219 764.2 513 87.3
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 1.8e-218 762.7 513 87.1
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 3.1e-218 761.9 511 84.0
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 4.1e-218 761.5 515 88.5
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 5.3e-218 761.1 514 89.7
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 7.0e-218 760.8 514 89.5
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 9.1e-218 760.4 514 84.0
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 9.1e-218 760.4 514 84.0
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 1.2e-217 760.0 527 78.7
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 3.5e-217 758.4 504 88.3
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 5.9e-217 757.7 514 89.3
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 2.9e-216 755.4 535 81.7
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 3.8e-216 755.0 511 83.2
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 8.5e-216 753.8 511 82.8
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.2e-215 751.5 504 88.3
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 5.5e-215 751.1 511 85.3
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 3.6e-214 748.4 535 85.6
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 3.6e-214 748.4 511 86.3
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 6.1e-214 747.7 507 88.6
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.0e-213 746.9 500 87.2
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 1.0e-213 746.9 542 79.9
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 3.9e-213 745.0 509 86.2
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 3.9e-213 745.0 509 86.2
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 6.7e-213 744.2 511 85.9
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 1.3e-211 740.0 514 86.0
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 3.1e-210 735.3 514 82.7
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 2.1e-206 722.6 511 86.5
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 2.1e-206 722.6 514 76.8
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 2.3e-205 719.2 520 83.3
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 6.8e-205 717.6 514 82.5
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.0e-204 716.1 509 86.4
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 2.4e-202 709.1 557 78.5
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.4e-202 709.1 485 87.2
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.1e-202 708.8 514 83.1
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.2e-200 702.6 514 75.3
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 4.7e-198 694.9 525 82.7
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 5.2e-197 691.4 464 92.7
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 1.2e-196 690.3 514 81.1
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 5.7e-196 688.0 551 70.4
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 6.3e-195 684.5 511 74.2
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 1.3e-192 676.8 468 89.1
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 1.9e-191 672.9 484 84.3
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.0e-185 652.9 513 81.7
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 6.8e-181 637.9 428 91.4
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 4.4e-180 635.2 430 91.9
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.7e-179 633.3 435 87.1
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 1.2e-161 573.9 511 72.2
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 4.3e-159 565.5 414 87.0
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 5.8e-156 555.1 511 68.7
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.7e-139 500.4 269 91.4
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 7.9e-137 491.5 254 96.9
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.2e-121 441.0 322 82.3
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 3.9e-120 436.0 308 80.8
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 1.6e-113 414.1 385 61.6
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 1.3e-110 404.4 210 98.6
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 2.8e-110 403.3 210 98.1
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 2.1e-89 334.0 365 72.1
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.2e-80 302.8 257 81.7
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 7.0e-77 292.4 518 50.2
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 2.4e-69 267.3 175 86.3
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 9.5e-66 255.4 134 97.0
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 8.9e-64 248.8 526 35.9
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 2.6e-47 194.1 149 67.1
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 1.5e-42 178.3 99 82.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 3.4e-39 167.2 295 44.4
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 2.4e-37 161.0 80 93.8
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.9e-34 151.4 80 92.5
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 4.3e-34 150.2 238 45.8
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 1.6e-33 148.3 137 63.5
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 2.1e-33 147.9 107 72.9
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.1e-32 145.6 295 32.9
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 9.3e-29 132.5 70 90.0
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 6.6e-27 126.3 69 87.0
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 5.6e-26 123.2 64 87.5
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 5.6e-26 123.2 64 87.5
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 3.2e-21 107.5 52 94.2
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 1.2e-20 105.5 56 83.9
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 3.9e-19 100.5 56 76.8
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 4.8e-17 93.6 46 84.8
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.4e-16 91.3 47 97.9
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 3.1e-16 90.9 70 64.3
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 3.1e-16 90.9 70 64.3
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 9.0e-16 89.4 128 40.6
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 9.0e-16 89.4 46 80.4
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 1.3e-11 75.5 105 43.8
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.3e-11 75.5 134 73.1
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 3.9e-11 73.9 36 86.1
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 6.3e-09 66.6 62 59.7
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 6.9e-08 63.2 35 80.0
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 1.7e-06 58.5 29 82.8
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 3.8e-06 57.4 74 51.4


User provided reference genes

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