Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0264 Papaver somniferum HOM05D005565 ORTHO05D006950 1.1e-189 666.8 406 100.0
PSO675G3222 Papaver somniferum HOM05D005565 ORTHO05D006950 1.0e-179 633.6 406 93.8
TAR626G1362 Trochodendron aralioides HOM05D005565 ORTHO05D006950 9.9e-143 510.8 405 79.3
Aqoxy1G01543 Aquilegia oxysepala HOM05D005565 ORTHO05D006950 2.9e-142 509.2 409 77.3
MBI10_g00722_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 9.9e-135 484.2 402 80.6
Nn3g20239 Nelumbo nucifera HOM05D005565 ORTHO05D006950 3.9e-131 472.2 405 73.8
Medtr4g083380 Medicago truncatula HOM05D005565 ORTHO05D006950 1.4e-128 463.8 414 72.9
Cfa000824 Carpinus fangiana HOM05D005565 ORTHO05D006950 2.4e-128 463.0 406 72.4
RcHm_v2.0_Chr5g0015891 Rosa chinensis HOM05D005565 ORTHO05D006950 1.2e-127 460.7 406 72.7
Prupe.4G089800 Prunus persica HOM05D005565 ORTHO05D006950 2.2e-126 456.4 411 70.6
CiPaw.10G085900 Carya illinoinensis HOM05D005565 ORTHO05D006950 6.4e-126 454.9 410 72.0
FAN21G3355 Fragaria x ananassa HOM05D005565 ORTHO05D006950 2.4e-125 453.0 408 70.8
QL05p061027 Quercus lobata HOM05D005565 ORTHO05D006950 4.2e-125 452.2 408 71.1
FAN11G0475 Fragaria x ananassa HOM05D005565 ORTHO05D006950 5.5e-125 451.8 406 71.2
FvH4_3g10030 Fragaria vesca HOM05D005565 ORTHO05D006950 3.5e-124 449.1 406 70.9
VMungo0251G3128 Vigna mungo HOM05D005565 ORTHO05D006950 3.9e-123 445.7 407 69.8
Glyma.07G224200 Glycine max HOM05D005565 ORTHO05D006950 5.1e-123 445.3 409 72.6
HPP92_019891 Vanilla planifolia HOM05D005565 ORTHO05D006950 8.7e-123 444.5 404 71.0
Dinv06439 Davidia involucrata HOM05D005565 ORTHO05D006950 1.1e-122 444.1 404 71.5
FAN16G1178 Fragaria x ananassa HOM05D005565 ORTHO05D006950 1.1e-122 444.1 411 70.1
Aa31LG6G11740 Aethionema arabicum HOM05D005565 ORTHO05D006950 1.9e-122 443.4 404 73.8
TWI53G0754 Tripterygium wilfordii HOM05D005565 ORTHO05D006950 5.6e-122 441.8 404 74.5
Cpa.g.sc17.91 Carica papaya HOM05D005565 ORTHO05D006950 2.1e-121 439.9 407 70.3
CsaV3_6G052300 Cucumis sativus L. HOM05D005565 ORTHO05D006950 3.7e-121 439.1 406 70.9
MD05G1274000 Malus domestica HOM05D005565 ORTHO05D006950 4.8e-121 438.7 410 69.0
Atru.chr10.872 Acer truncatum HOM05D005565 ORTHO05D006950 6.2e-121 438.3 411 71.8
Lj1A1162G46 Lonicera japonica HOM05D005565 ORTHO05D006950 6.2e-121 438.3 408 72.5
THA.LOC104812687 Tarenaya hassleriana HOM05D005565 ORTHO05D006950 1.1e-120 437.6 404 70.5
Duzib192G0128 Durio zibethinus HOM05D005565 ORTHO05D006950 5.8e-119 431.8 413 68.8
AT1G30480 Arabidopsis thaliana HOM05D005565 ORTHO05D006950 1.0e-118 431.0 408 69.6
CANSAT35G0106 Cannabis sativa HOM05D005565 ORTHO05D006950 1.0e-118 431.0 404 68.1
CARHR029890 Cardamine hirsuta HOM05D005565 ORTHO05D006950 1.7e-118 430.3 407 69.8
Carub.0001s2870 Capsella rubella HOM05D005565 ORTHO05D006950 2.5e-117 426.4 405 69.6
PGR083G1318 Punica granatum HOM05D005565 ORTHO05D006950 3.2e-117 426.0 406 72.9
Sed0002078 Sechium edule HOM05D005565 ORTHO05D006950 3.2e-117 426.0 406 69.2
Psat7g132960 Pisum sativum HOM05D005565 ORTHO05D006950 4.2e-117 425.6 472 61.7
Sp1g26320 Schrenkiella parvula HOM05D005565 ORTHO05D006950 7.1e-117 424.9 405 69.4
Thecc.06G001100 Theobroma cacao HOM05D005565 ORTHO05D006950 9.3e-117 424.5 406 68.2
Actinidia13472 Actinidia chinensis HOM05D005565 ORTHO05D006950 1.2e-116 424.1 404 68.1
CSS0026797 Camellia sinensis var. sinensis HOM05D005565 ORTHO05D006950 1.6e-116 423.7 406 71.7
Phvul.002G100900 Phaseolus vulgaris HOM05D005565 ORTHO05D006950 2.1e-116 423.3 408 67.4
Lj4g0020694 Lotus japonicus HOM05D005565 ORTHO05D006950 2.7e-116 422.9 414 66.9
CANSAT35G0536 Cannabis sativa HOM05D005565 ORTHO05D006950 3.5e-116 422.5 404 67.1
ClCG01G025100 Citrullus lanatus HOM05D005565 ORTHO05D006950 3.5e-116 422.5 405 67.4
Thhalv10007861m.g Eutrema salsugineum HOM05D005565 ORTHO05D006950 3.5e-116 422.5 407 71.0
Zm00001eb315350 Zea mays HOM05D005565 ORTHO05D006950 1.0e-115 421.0 405 65.9
MELO3C007079.2 Cucumis melo HOM05D005565 ORTHO05D006950 2.3e-115 419.9 426 66.0
Ca_18788_v3 Cicer arietinum L. HOM05D005565 ORTHO05D006950 3.0e-115 419.5 409 61.1
Gorai.011G004100 Gossypium raimondii HOM05D005565 ORTHO05D006950 6.7e-115 418.3 407 66.3
Glyma.20G024100 Glycine max HOM05D005565 ORTHO05D006950 8.7e-115 417.9 413 67.3
Gohir.A10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 8.7e-115 417.9 407 67.6
MD10G1253700 Malus domestica HOM05D005565 ORTHO05D006950 1.5e-114 417.2 406 66.5
Potri.011G098100 Populus trichocarpa HOM05D005565 ORTHO05D006950 1.9e-114 416.8 351 71.8
Sc17g0004650 Simmondsia chinensis HOM05D005565 ORTHO05D006950 5.7e-114 415.2 422 66.8
Sabra11G0084800 Salix brachista HOM05D005565 ORTHO05D006950 2.2e-113 413.3 430 66.5
Potri.001G372600 Populus trichocarpa HOM05D005565 ORTHO05D006950 3.7e-113 412.5 403 65.0
Sabra11G0091000 Salix brachista HOM05D005565 ORTHO05D006950 6.3e-113 411.8 430 66.3
Zm00001eb376390 Zea mays HOM05D005565 ORTHO05D006950 3.1e-112 409.5 405 63.5
Lsat_1_v5_gn_1_117781 Lactuca sativa HOM05D005565 ORTHO05D006950 2.0e-111 406.8 409 66.7
C03p76800 Brassica napus HOM05D005565 ORTHO05D006950 5.9e-111 405.2 402 65.4
A08p24410 Brassica napus HOM05D005565 ORTHO05D006950 1.0e-110 404.4 406 67.5
Manes.06G055100 Manihot esculenta HOM05D005565 ORTHO05D006950 1.3e-110 404.1 404 64.6
vmacro03395 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 1.9e-109 400.2 405 66.7
SHI20681 Sapria himalayana HOM05D005565 ORTHO05D006950 3.2e-109 399.4 409 64.3
COL.COLO4_26828 Corchorus olitorius HOM05D005565 ORTHO05D006950 2.3e-107 393.3 405 58.3
Rhsim13G0120300 Rhododendron simsii HOM05D005565 ORTHO05D006950 3.9e-107 392.5 404 65.8
Eucgr.D00186 Eucalyptus grandis HOM05D005565 ORTHO05D006950 5.1e-107 392.1 405 61.7
Hma1.2p1_0333F.1_g128300 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 1.1e-106 391.0 419 66.6
DCAR_027864 Daucus carota HOM05D005565 ORTHO05D006950 4.3e-106 389.0 409 64.5
EL10Ac8g19576 Beta vulgaris HOM05D005565 ORTHO05D006950 5.7e-106 388.7 417 67.6
SEGI_17605 Sequoiadendron giganteum HOM05D005565 ORTHO05D006950 4.8e-105 385.6 417 60.0
arahy.Tifrunner.gnm1.ann1.V3UUHR Arachis hypogaea HOM05D005565 ORTHO05D006950 6.3e-105 385.2 413 63.0
Oeu041100.1 Olea europaea HOM05D005565 ORTHO05D006950 6.3e-105 385.2 407 68.3
arahy.Tifrunner.gnm1.ann1.59WFQY Arachis hypogaea HOM05D005565 ORTHO05D006950 8.2e-105 384.8 413 63.2
Sabra16G0245100 Salix brachista HOM05D005565 ORTHO05D006950 2.4e-104 383.3 462 56.1
Manes.14G122600 Manihot esculenta HOM05D005565 ORTHO05D006950 4.5e-103 379.0 399 60.4
Os01g0526100 Oryza sativa ssp. japonica HOM05D005565 ORTHO05D006950 5.9e-103 378.6 309 71.2
AL1G44510 Arabidopsis lyrata HOM05D005565 ORTHO05D006950 1.0e-102 377.9 407 65.1
BolC3t19934H Brassica oleracea HOM05D005565 ORTHO05D006950 3.8e-102 375.9 402 65.7
BcaNung05264 Brassica carinata HOM05D005565 ORTHO05D006950 1.1e-101 374.4 402 64.9
ATR0165G027 Amborella trichopoda HOM05D005565 ORTHO05D006950 1.9e-101 373.6 426 64.8
A09p35980 Brassica napus HOM05D005565 ORTHO05D006950 9.4e-101 371.3 404 64.6
BraA09t39122Z Brassica rapa HOM05D005565 ORTHO05D006950 9.4e-101 371.3 404 64.6
BcaNung05265 Brassica carinata HOM05D005565 ORTHO05D006950 1.2e-100 370.9 373 59.8
Cc09_g08070 Coffea canephora HOM05D005565 ORTHO05D006950 2.1e-100 370.2 413 65.4
Mapoly0023s0048 Marchantia polymorpha HOM05D005565 ORTHO05D006950 4.7e-100 369.0 459 60.8
CAN.G954.26 Capsicum annuum HOM05D005565 ORTHO05D006950 1.4e-99 367.5 407 64.1
HanXRQChr01g0003371 Helianthus annuus HOM05D005565 ORTHO05D006950 4.8e-97 359.0 420 56.7
ECA240G3173 Erigeron canadensis HOM05D005565 ORTHO05D006950 6.3e-97 358.6 413 65.1
MSTRG.14795 Avicennia marina HOM05D005565 ORTHO05D006950 1.5e-95 354.0 405 64.7
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 2.6e-95 353.2 405 58.0
Oeu015183.1 Olea europaea HOM05D005565 ORTHO05D006950 3.2e-93 346.3 405 63.7
Pp3c2_18610 Physcomitrium patens HOM05D005565 ORTHO05D006950 1.6e-92 344.0 434 58.1
SGA_v2.0_scaffold1G00240 Striga asiatica HOM05D005565 ORTHO05D006950 6.1e-92 342.0 407 62.9
Sopen02g018950 Solanum pennellii HOM05D005565 ORTHO05D006950 2.6e-90 336.7 421 57.2
Solyc02g069790.3 Solanum lycopersicum HOM05D005565 ORTHO05D006950 8.2e-89 331.6 420 56.7
PGSC0003DMG400021191 Solanum tuberosum HOM05D005565 ORTHO05D006950 8.2e-89 331.6 414 57.0
Migut.H01333 Erythranthe guttata HOM05D005565 ORTHO05D006950 1.1e-88 331.3 409 61.6
SGA_v2.0_scaffold223G42860 Striga asiatica HOM05D005565 ORTHO05D006950 1.7e-86 323.9 405 59.8
Peaxi162Scf00670g00348 Petunia axillaris HOM05D005565 ORTHO05D006950 1.9e-85 320.5 413 58.8
AUR62042519 Chenopodium quinoa HOM05D005565 ORTHO05D006950 4.2e-85 319.3 404 51.0
FAN25G2018 Fragaria x ananassa HOM05D005565 ORTHO05D006950 2.8e-81 306.6 187 84.5
GSVIVG01021628001 Vitis vinifera HOM05D005565 ORTHO05D006950 8.3e-81 305.1 171 88.9
AagrBONN_evm.TU.Sc2ySwM_228.4814 Anthoceros agrestis HOM05D005565 ORTHO05D006950 1.6e-79 300.8 431 46.2
BraA08t34396Z Brassica rapa HOM05D005565 ORTHO05D006950 2.2e-78 297.0 188 81.9
Haze_05807 Corylus avellana HOM05D005565 ORTHO05D006950 5.5e-77 292.4 314 68.5
MBI18_g10581_MAGBIO Magnolia biondii HOM05D005565 ORTHO05D006950 1.6e-76 290.8 310 65.2
CBR_g29718 Chara braunii HOM05D005565 ORTHO05D006950 2.0e-74 283.9 475 49.7
BcaB07g32657 Brassica carinata HOM05D005565 ORTHO05D006950 4.8e-73 279.3 171 83.6
C05p29480 Brassica napus HOM05D005565 ORTHO05D006950 4.8e-73 279.3 171 83.6
BolC5t31678H Brassica oleracea HOM05D005565 ORTHO05D006950 4.8e-73 279.3 171 83.6
Nitab4.5_0004596g0030 Nicotiana tabacum HOM05D005565 ORTHO05D006950 7.7e-71 271.9 215 66.5
CDE10G1222 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 8.0e-68 261.9 148 86.5
BcaB07g32683 Brassica carinata HOM05D005565 ORTHO05D006950 2.8e-65 253.4 404 49.8
CDE10G1151 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 1.8e-64 250.8 404 52.2
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 1.8e-64 250.8 172 78.5
SMO351G0200 Selaginella moellendorffii HOM05D005565 ORTHO05D006950 1.7e-62 244.2 308 52.3
Gohir.D10G003700 Gossypium hirsutum HOM05D005565 ORTHO05D006950 8.6e-62 241.9 309 60.5
BcaC01g00198 Brassica carinata HOM05D005565 ORTHO05D006950 9.8e-58 228.4 143 81.1
Lalb_Chr05g0219831 Lupinus albus HOM05D005565 ORTHO05D006950 6.0e-55 219.2 138 81.2
Dinv23083 Davidia involucrata HOM05D005565 ORTHO05D006950 3.1e-51 206.8 307 56.0
Cre11.g467591 Chlamydomonas reinhardtii HOM05D005565 ORTHO05D006950 5.6e-45 186.0 347 43.8
Haze_05809 Corylus avellana HOM05D005565 ORTHO05D006950 8.1e-44 182.2 102 85.3
MCO12G324 Micromonas commoda HOM05D005565 ORTHO05D006950 4.4e-42 176.4 426 36.4
Hma1.2p1_0333F.1_g128290 Hydrangea macrophylla HOM05D005565 ORTHO05D006950 2.9e-41 173.7 99 80.8
BcaB07g32658 Brassica carinata HOM05D005565 ORTHO05D006950 2.3e-38 164.1 97 79.4
Haze_26712 Corylus avellana HOM05D005565 ORTHO05D006950 2.5e-37 160.6 310 37.1
Nitab4.5_0002719g0090 Nicotiana tabacum HOM05D005565 ORTHO05D006950 8.1e-36 155.6 97 73.2
C07p15100 Brassica napus HOM05D005565 ORTHO05D006950 2.9e-33 147.1 101 73.3
AUR62027340 Chenopodium quinoa HOM05D005565 ORTHO05D006950 1.7e-30 137.9 279 40.5
TPR.G34068 Trifolium pratense HOM05D005565 ORTHO05D006950 1.4e-24 118.2 197 57.4
PRCOL_00005056 Prasinoderma coloniale HOM05D005565 ORTHO05D006950 2.3e-22 110.9 193 42.0
CDE10G0349 Ceratophyllum demersum HOM05D005565 ORTHO05D006950 9.6e-21 105.5 73 78.1
CBR_g23080 Chara braunii HOM05D005565 ORTHO05D006950 4.0e-19 100.1 105 45.7
SGA_v2.0_scaffold22G09881 Striga asiatica HOM05D005565 ORTHO05D006950 4.6e-15 86.7 97 43.3
BcaC01g00197 Brassica carinata HOM05D005565 ORTHO05D006950 5.1e-14 83.2 235 48.1
CBR_g28574 Chara braunii HOM05D000409 ORTHO05D001956 7.6e-10 69.3 132 32.6
Ciclev10018985m.g Citrus clementina HOM05D000565 ORTHO05D003973 1.3e-09 68.6 130 40.8
SGA_v2.0_scaffold273G46430 Striga asiatica HOM05D005565 ORTHO05D402892 1.7e-09 68.2 85 50.6
SGA_v2.0_scaffold74G24562 Striga asiatica HOM05D005565 ORTHO05D401758 4.9e-09 66.6 84 50.0
SMO348G0102 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 8.4e-09 65.9 101 35.6
CBR_g28575 Chara braunii HOM05D001563 ORTHO05D001956 1.1e-08 65.5 103 35.9
CBR_g28571 Chara braunii HOM05D001563 ORTHO05D001956 1.9e-08 64.7 132 31.8
SEGI_22204 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 4.2e-08 63.5 102 34.3
Mapoly0038s0101 Marchantia polymorpha HOM05D001563 ORTHO05D001956 5.5e-08 63.2 97 35.1
Ca_19741_v3 Cicer arietinum L. HOM05D001563 ORTHO05D001956 7.1e-08 62.8 101 35.6
HanXRQChr09g0262121 Helianthus annuus HOM05D001563 ORTHO05D001956 1.2e-07 62.0 105 35.2
SMO201G0011 Selaginella moellendorffii HOM05D001563 ORTHO05D001956 1.2e-07 62.0 110 37.3
SEGI_21623 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 1.6e-07 61.6 101 33.7
Solyc12g008750.3 Solanum lycopersicum HOM05D001563 ORTHO05D001956 3.5e-07 60.5 103 29.1
Sopen12g003680 Solanum pennellii HOM05D001563 ORTHO05D001956 3.5e-07 60.5 103 29.1
PGSC0003DMG400000344 Solanum tuberosum HOM05D001563 ORTHO05D001956 6.0e-07 59.7 103 29.1
Nitab4.5_0005471g0020 Nicotiana tabacum HOM05D001563 ORTHO05D001956 1.3e-06 58.5 103 29.1
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 1.3e-06 58.5 101 32.7
AagrBONN_evm.TU.Sc2ySwM_117.747 Anthoceros agrestis HOM05D001563 ORTHO05D001956 1.8e-06 58.2 100 33.0
Lalb_Chr15g0080491 Lupinus albus HOM05D001563 ORTHO05D001956 1.8e-06 58.2 101 33.7
Nitab4.5_0000540g0190 Nicotiana tabacum HOM05D001563 ORTHO05D001956 1.8e-06 58.2 103 29.1
ECA232G1424 Erigeron canadensis HOM05D001563 ORTHO05D001956 2.3e-06 57.8 95 32.6
HanXRQChr11g0324861 Helianthus annuus HOM05D001563 ORTHO05D001956 2.3e-06 57.8 102 34.3
Peaxi162Scf00498g00117 Petunia axillaris HOM05D001563 ORTHO05D001956 2.3e-06 57.8 103 29.1
Lsat_1_v5_gn_4_153381 Lactuca sativa HOM05D001563 ORTHO05D012319 3.0e-06 57.4 106 29.2
Dinv26814 Davidia involucrata HOM05D001563 ORTHO05D001956 3.9e-06 57.0 100 33.0
MD05G1123800 Malus domestica HOM05D002097 ORTHO05D002248 5.1e-06 56.6 98 31.6
SGA_v2.0_scaffold2G01114 Striga asiatica HOM05D001563 ORTHO05D001956 5.1e-06 56.6 100 29.0
MSTRG.19982 Avicennia marina HOM05D002097 ORTHO05D002248 6.7e-06 56.2 98 27.6
ECA232G2130 Erigeron canadensis HOM05D001563 ORTHO05D001956 6.7e-06 56.2 105 30.5
MCO15G197 Micromonas commoda HOM05D002097 ORTHO05D004937 6.7e-06 56.2 102 33.3


User provided reference genes

Program Settings