Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 4.4e-139 498.0 270 100.0
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 3.5e-136 488.4 269 97.8
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.3e-102 375.2 271 74.9
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.3e-102 375.2 271 74.9
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 4.3e-102 375.2 277 76.2
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 9.6e-102 374.0 248 82.7
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 1.6e-101 373.2 276 73.2
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.8e-101 372.5 271 74.5
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 3.7e-101 372.1 277 76.2
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 1.4e-100 370.2 270 74.8
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 1.4e-100 370.2 273 74.4
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 6.9e-100 367.9 269 74.7
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 9.0e-100 367.5 277 75.8
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 9.0e-100 367.5 268 75.7
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.5e-99 366.7 265 77.0
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 1.5e-99 366.7 268 75.7
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.0e-99 366.3 277 74.4
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.5e-99 365.2 268 77.2
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 7.6e-99 364.4 268 76.1
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 1.0e-98 364.0 258 79.1
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 1.3e-98 363.6 277 74.0
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.7e-98 363.2 276 75.7
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 2.2e-98 362.8 269 76.6
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 2.9e-98 362.5 258 76.0
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.9e-98 362.5 250 76.8
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 6.5e-98 361.3 245 80.8
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 6.5e-98 361.3 277 73.3
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 8.4e-98 360.9 277 74.7
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.4e-97 360.1 284 70.8
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.4e-97 360.1 275 72.4
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 2.5e-97 359.4 269 75.8
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.5e-97 359.4 266 73.3
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.2e-97 358.6 266 72.9
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 2.1e-96 356.3 264 74.6
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 1.8e-95 353.2 278 73.0
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 3.0e-95 352.4 297 70.0
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 5.1e-95 351.7 276 73.6
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 8.7e-95 350.9 277 70.8
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.1e-94 350.5 261 74.3
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 1.5e-94 350.1 277 70.8
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 4.3e-94 348.6 273 72.9
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 4.3e-94 348.6 261 75.1
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 5.7e-94 348.2 274 70.4
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 5.7e-94 348.2 277 71.1
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.3e-93 347.1 270 73.0
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 2.1e-93 346.3 272 71.7
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 3.7e-93 345.5 269 72.1
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 4.8e-93 345.1 269 71.7
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 4.8e-93 345.1 270 71.1
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 1.1e-92 344.0 269 70.6
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.4e-92 343.6 275 72.4
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 1.4e-92 343.6 277 70.0
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 1.8e-92 343.2 239 78.7
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 1.8e-92 343.2 270 72.6
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 3.1e-92 342.4 268 72.0
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 3.1e-92 342.4 249 76.7
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 6.9e-92 341.3 268 73.1
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 9.0e-92 340.9 276 71.4
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 1.2e-91 340.5 270 70.4
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 3.4e-91 339.0 268 70.9
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 5.8e-91 338.2 269 71.7
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 1.0e-90 337.4 306 67.0
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 1.3e-90 337.0 254 72.4
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 2.2e-90 336.3 265 74.0
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 2.9e-90 335.9 290 65.5
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 3.8e-90 335.5 258 71.7
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 3.8e-90 335.5 277 71.1
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 3.8e-90 335.5 277 71.1
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 6.5e-90 334.7 266 71.8
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 8.4e-90 334.3 243 74.1
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.1e-89 334.0 244 76.6
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 1.1e-89 334.0 249 73.9
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 1.9e-89 333.2 243 74.5
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 1.9e-89 333.2 243 74.5
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 1.9e-89 333.2 246 74.0
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 2.5e-89 332.8 243 74.9
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 3.2e-89 332.4 243 77.4
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 4.2e-89 332.0 243 77.4
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 4.2e-89 332.0 266 70.7
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 7.1e-89 331.3 243 74.9
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 9.3e-89 330.9 277 70.4
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 2.1e-88 329.7 254 71.3
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 2.1e-88 329.7 243 77.0
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 2.1e-88 329.7 243 77.0
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 3.5e-88 328.9 243 77.0
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 3.5e-88 328.9 243 76.5
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 3.5e-88 328.9 243 77.0
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 3.5e-88 328.9 275 68.7
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 4.6e-88 328.6 266 69.9
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 7.9e-88 327.8 243 76.1
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 1.3e-87 327.0 269 71.0
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 3.0e-87 325.9 243 76.1
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 3.0e-87 325.9 261 69.3
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 5.1e-87 325.1 267 72.3
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 5.1e-87 325.1 239 76.2
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.5e-86 323.6 275 70.2
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 1.5e-86 323.6 259 70.3
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.9e-86 323.2 276 68.1
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 3.3e-86 322.4 250 72.4
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 1.5e-83 313.5 269 67.3
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 4.5e-83 312.0 269 66.5
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 1.3e-82 310.5 249 71.5
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 2.2e-82 309.7 245 73.9
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 8.5e-82 307.8 245 70.6
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 4.6e-80 302.0 247 67.2
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.1e-76 290.8 247 65.6
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 8.5e-74 281.2 231 68.8
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.2e-72 277.3 212 75.9
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 7.9e-72 274.6 264 65.9
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.3e-71 273.1 275 58.9
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 5.1e-71 271.9 260 61.2
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.1e-70 270.8 260 61.9
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 9.7e-70 267.7 273 57.5
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 1.4e-63 247.3 154 87.0
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.5e-62 243.8 154 85.7
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 1.7e-61 240.4 214 65.4
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 2.9e-58 229.6 246 56.1
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 7.5e-54 214.9 263 49.0
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 5.9e-51 205.3 205 54.6
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 5.0e-50 202.2 125 83.2
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 8.5e-50 201.4 191 63.9
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.6e-48 196.1 182 62.1
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 5.2e-47 192.2 154 70.1
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.9e-42 176.4 154 65.6
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.9e-42 176.4 149 67.1
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.7e-37 159.5 182 55.5
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 5.9e-35 152.1 182 53.8
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.9e-34 149.8 182 52.2
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 2.5e-33 146.7 237 40.9
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 3.3e-33 146.4 276 41.3
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 3.7e-29 132.9 106 67.0
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.6e-24 116.3 68 86.8
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.3e-21 107.8 71 84.5
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 6.4e-21 105.5 123 54.5
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 8.6e-18 95.1 121 49.6
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 8.6e-18 95.1 73 61.6
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 3.1e-15 86.7 105 53.3
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 1.4e-12 77.8 124 45.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 2.5e-09 67.0 172 33.1
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 1.8e-07 60.8 43 72.1
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 2.4e-07 60.5 43 67.4


User provided reference genes

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