Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 2.3e-190 670.2 962 100.0
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 3.1e-179 633.3 966 98.1
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 4.2e-115 420.2 336 69.9
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 6.2e-111 406.4 348 64.7
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 1.4e-102 378.6 359 61.3
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.1e-99 369.0 356 59.6
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 6.0e-98 363.2 353 60.3
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.4e-94 352.1 365 58.1
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 9.0e-94 349.4 355 59.7
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 5.5e-91 340.1 371 52.6
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 1.6e-90 338.6 347 55.6
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.0e-89 335.9 319 56.4
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 3.9e-89 334.0 302 57.6
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 6.7e-89 333.2 346 54.9
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 8.8e-89 332.8 368 55.2
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.5e-88 332.0 301 57.8
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 7.4e-88 329.7 347 51.9
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 2.2e-87 328.2 346 56.4
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 2.8e-87 327.8 351 58.7
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 1.8e-86 325.1 389 51.7
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 3.1e-86 324.3 262 64.5
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 4.1e-86 323.9 358 54.2
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 4.1e-86 323.9 361 52.4
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 9.1e-86 322.8 351 53.3
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.5e-85 320.5 259 64.5
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 4.5e-85 320.5 259 64.5
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 5.9e-85 320.1 300 60.3
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 5.9e-85 320.1 318 54.1
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.3e-84 318.9 356 52.8
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 1.3e-84 318.9 340 55.0
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.7e-84 318.5 354 54.0
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 2.9e-84 317.8 277 64.6
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 3.8e-84 317.4 336 56.5
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 5.0e-84 317.0 351 52.1
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 5.0e-84 317.0 311 58.2
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 5.0e-84 317.0 346 56.1
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 6.5e-84 316.6 335 55.5
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 8.5e-84 316.2 345 53.9
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 8.5e-84 316.2 255 67.1
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.9e-83 315.1 336 56.2
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 1.9e-83 315.1 346 54.6
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 2.5e-83 314.7 310 58.1
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 2.5e-83 314.7 274 62.0
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.2e-83 314.3 320 57.8
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 7.2e-83 313.2 236 69.1
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 2.1e-82 311.6 238 66.0
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 2.7e-82 311.2 294 54.1
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 3.6e-82 310.8 265 61.5
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 7.9e-82 309.7 356 53.9
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 3.0e-81 307.8 271 62.7
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 3.9e-81 307.4 352 54.8
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 5.1e-81 307.0 358 52.5
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 5.1e-81 307.0 351 54.1
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 6.7e-81 306.6 335 55.2
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 6.7e-81 306.6 316 52.5
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 3.3e-80 304.3 347 53.3
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 9.7e-80 302.8 258 64.3
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 1.3e-79 302.4 356 50.0
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 1.7e-79 302.0 186 74.7
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.7e-79 302.0 271 59.8
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 3.7e-79 300.8 285 61.4
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 3.7e-79 300.8 334 50.9
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 4.8e-79 300.4 246 61.8
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 2.0e-77 295.0 244 60.7
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 4.5e-77 293.9 340 55.6
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.0e-76 292.7 263 60.8
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.0e-76 292.7 265 56.6
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 1.3e-76 292.4 353 55.0
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.7e-76 292.0 376 49.5
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.7e-76 292.0 265 56.6
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 8.5e-76 289.7 258 57.8
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 9.4e-75 286.2 307 53.4
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 1.6e-74 285.4 355 49.9
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 3.6e-74 284.3 322 48.8
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 2.3e-73 281.6 354 50.3
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 1.1e-72 279.3 336 53.9
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 4.4e-72 277.3 277 54.5
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 1.3e-71 275.8 275 54.2
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 1.7e-71 275.4 349 49.6
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 2.2e-71 275.0 348 50.6
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 6.3e-71 273.5 308 55.8
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 1.1e-70 272.7 355 50.1
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 4.1e-70 270.8 306 52.6
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 5.3e-70 270.4 270 53.7
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 9.1e-70 269.6 193 66.8
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 2.0e-69 268.5 265 56.2
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.5e-69 267.7 305 50.8
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 1.0e-68 266.2 198 66.7
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 1.3e-68 265.8 262 56.9
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 5.0e-68 263.8 262 57.3
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 4.0e-65 254.2 369 47.2
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 6.3e-63 246.9 249 54.2
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 9.1e-62 243.0 240 53.3
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.7e-60 238.8 350 48.6
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 8.5e-60 236.5 144 74.3
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 3.2e-59 234.6 143 76.2
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.2e-58 232.6 165 65.5
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 1.4e-57 229.2 185 60.5
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 2.8e-55 221.5 151 68.2
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 2.8e-50 204.9 185 50.8
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 4.0e-49 201.1 127 74.8
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 4.4e-48 197.6 186 57.0
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 2.4e-46 191.8 183 49.2
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.6e-45 189.1 181 47.5
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 3.1e-41 174.9 127 67.7
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.1e-35 156.4 182 44.0
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 4.3e-35 154.5 182 44.0
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.3e-33 148.7 211 37.4
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.7e-31 142.5 191 40.8
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 7.1e-30 137.1 83 77.1
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 7.1e-30 137.1 191 41.4
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.6e-29 134.4 103 56.3
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.5e-27 129.4 86 70.9
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 4.3e-27 127.9 85 72.9
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.6e-26 125.9 81 70.4
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 2.1e-26 125.6 83 71.1
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.8e-25 122.5 85 67.1
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 2.3e-25 122.1 88 65.9
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 6.8e-25 120.6 89 67.4
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.2e-24 119.8 81 70.4
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 2.0e-24 119.0 76 72.4
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 2.0e-24 119.0 75 74.7
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 4.4e-24 117.9 97 61.9
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 7.5e-24 117.1 119 53.8
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 9.9e-24 116.7 70 80.0
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.9e-22 112.5 81 63.0
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 2.1e-21 109.0 71 71.8
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 6.6e-20 104.0 84 58.3
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 4.7e-18 97.8 234 34.6
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 9.9e-16 90.1 61 73.8
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 2.1e-13 82.4 145 31.7
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.0e-13 80.9 43 83.7
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 1.7e-12 79.3 43 86.0
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 7.3e-11 73.9 45 75.6
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 2.1e-10 72.4 69 53.6
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.1e-09 70.1 45 73.3
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 5.8e-08 64.3 44 68.2
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 5.8e-08 64.3 44 68.2
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 1.1e-06 60.1 109 32.1
ECA236G2979 Erigeron canadensis HOM05D001413 ORTHO05D001385 1.4e-06 59.7 90 40.0
Eucgr.K03474 Eucalyptus grandis HOM05D001413 ORTHO05D001385 7.1e-06 57.4 95 36.8
PGR044G2059 Punica granatum HOM05D001413 ORTHO05D001385 9.3e-06 57.0 95 36.8
PGSC0003DMG400014645 Solanum tuberosum HOM05D001413 ORTHO05D001385 9.3e-06 57.0 95 36.8
TAR633G0922 Trochodendron aralioides HOM05D001413 ORTHO05D001385 9.3e-06 57.0 95 36.8


User provided reference genes

Program Settings