Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 2134.8 1179 100.0
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 2100.5 1173 98.7
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1697.9 1171 80.1
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1660.2 1170 78.8
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1656.0 1172 77.6
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1651.3 1166 77.9
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1645.2 1165 77.6
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1644.8 1165 78.3
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1643.6 1163 76.4
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1630.2 1169 77.1
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1628.6 1165 78.2
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1627.1 1166 77.1
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1625.9 1160 76.6
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1625.1 1166 77.4
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1624.4 1165 77.3
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1622.8 1153 76.3
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1619.4 1165 77.0
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1619.0 1165 76.8
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1613.2 1155 77.7
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1604.0 1170 74.8
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1602.8 1169 74.9
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1602.4 1170 74.7
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1598.6 1159 76.0
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1598.2 1180 75.7
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1596.6 1161 75.3
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1590.5 1135 78.1
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1585.9 1161 76.2
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1580.1 1154 75.0
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1580.1 1162 76.9
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1579.7 1183 74.5
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1578.9 1168 74.1
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1578.5 1171 76.5
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1578.1 1177 72.8
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1576.6 1159 74.9
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1574.7 1171 74.6
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1571.2 1156 74.4
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1570.8 1165 75.5
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1569.3 1180 73.9
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1568.9 1168 72.1
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1568.5 1219 73.1
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1567.0 1156 73.4
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1565.4 1176 73.5
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1561.6 1163 73.8
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1560.4 1229 71.0
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1559.7 1161 73.9
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1557.3 1195 72.1
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1557.0 1165 73.8
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1557.0 1162 71.8
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1552.7 1157 73.5
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1552.7 1195 73.5
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1549.6 1169 75.5
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1549.3 1172 73.1
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1549.3 1162 74.2
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1549.3 1166 71.0
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1549.3 1180 73.9
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1547.3 1193 71.7
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1543.9 1175 71.4
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1537.3 1164 71.9
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1527.3 1163 71.5
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1526.5 1166 72.7
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1521.9 1189 70.1
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1521.5 1156 73.2
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1519.6 1196 70.5
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1518.8 1167 72.8
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1513.0 1156 72.8
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1505.3 1183 71.3
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1499.2 1184 69.9
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1489.2 1164 70.7
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1488.0 1104 74.1
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1484.2 1188 70.7
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1483.0 1163 70.1
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1481.8 1165 70.9
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1481.5 1165 68.1
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1476.5 1151 70.7
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1476.5 1167 70.3
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1473.4 1164 67.8
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1473.4 1164 67.8
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1473.0 1156 68.0
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1473.0 1156 70.1
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1472.2 1285 65.8
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1472.2 1161 70.0
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1471.8 1063 77.0
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1471.1 1159 70.1
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1469.9 1167 69.7
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1469.9 1383 63.1
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1469.5 1172 71.6
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1466.1 1163 69.6
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1461.0 1200 68.3
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1460.7 1162 68.7
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1459.9 1161 71.4
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1454.1 1164 70.0
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1446.0 1175 67.8
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1432.9 1172 69.3
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1414.1 1167 70.0
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1400.6 1156 67.2
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1395.2 1161 68.6
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1377.5 1193 64.7
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1337.0 1198 63.7
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1334.7 1162 64.9
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1318.5 858 78.8
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1295.4 909 76.3
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1293.5 879 77.8
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1275.4 1191 61.0
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1181.0 790 80.1
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1168.7 819 75.3
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1132.9 1203 54.9
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1089.7 739 79.0
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 3.7e-307 1058.5 788 71.1
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 7.2e-295 1017.7 882 68.6
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 6.2e-270 934.9 972 58.7
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-269 934.1 785 67.8
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 1.0e-264 917.5 656 72.9
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 3.3e-255 885.9 941 58.8
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.2e-202 709.5 595 65.7
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 5.7e-183 646.0 533 64.4
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 2.3e-179 634.0 960 40.8
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 5.6e-162 576.2 410 72.0
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 4.7e-153 546.6 294 91.5
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 5.4e-149 533.1 354 77.7
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 4.3e-130 470.3 433 62.6
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 3.1e-120 437.6 308 74.0
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 1.7e-118 431.8 1166 31.4
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 8.2e-113 412.9 367 67.8
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 1.0e-110 406.0 237 83.1
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.1e-108 398.3 825 36.6
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.2e-100 372.5 292 68.5
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 2.5e-98 364.8 1047 29.3
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 4.4e-90 337.4 555 41.6
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 2.5e-85 321.6 181 85.1
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 9.4e-85 319.7 181 83.4
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 9.4e-85 319.7 181 83.4
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 1.7e-81 308.9 171 88.9
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.1e-80 304.3 215 72.6
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.0e-79 302.0 215 72.1
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 1.3e-73 282.7 346 58.7
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 3.7e-73 281.2 339 53.7
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 3.1e-72 278.1 224 65.2
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.6e-68 265.8 325 56.9
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 2.7e-63 248.4 387 47.3
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-61 243.0 201 63.7
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 9.8e-58 229.9 189 73.0
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.2e-55 223.0 135 83.0
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-54 219.5 164 68.9
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.0e-51 209.9 154 70.8
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 2.3e-51 208.8 314 50.6
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 8.3e-49 200.3 319 40.1
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 7.8e-47 193.7 138 71.0
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.0e-38 166.8 96 84.4
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.3e-35 155.6 154 60.4
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 2.3e-35 155.6 233 49.8
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 8.9e-35 153.7 120 65.0
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.1e-32 146.7 83 84.3
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.9e-32 146.0 96 75.0
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 3.5e-31 141.7 77 88.3
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 3.5e-31 141.7 123 61.8
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.2e-28 133.3 73 87.7
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 6.8e-27 127.5 131 61.1
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.5e-26 126.3 116 67.2
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 2.6e-26 125.6 109 64.2
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 9.3e-24 117.1 87 64.4
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 3.9e-22 111.7 214 41.1
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.9e-21 109.4 84 66.7
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.3e-20 106.7 65 81.5
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 1.6e-20 106.3 83 62.7
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 8.1e-20 104.0 72 70.8
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 1.3e-17 96.7 59 84.7
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 6.4e-17 94.4 68 64.7
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-16 92.8 77 61.0
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 2.4e-16 92.4 57 73.7
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 4.2e-16 91.7 56 73.2
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 9.6e-13 80.5 119 43.7
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 4.8e-12 78.2 56 62.5
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 1.8e-11 76.3 46 80.4
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.4e-08 66.6 45 64.4
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 1.4e-08 66.6 152 34.9
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 1.9e-08 66.2 113 43.4
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 2.3e-06 59.3 46 56.5
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 3.9e-06 58.5 147 34.7


User provided reference genes

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