Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1823.9 949 100.0
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1792.7 949 98.2
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1548.5 960 82.8
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1522.3 950 82.2
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1508.4 961 80.1
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1503.0 962 80.8
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1501.1 957 81.3
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1496.5 954 79.9
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1494.6 956 79.7
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1493.4 912 80.3
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1491.1 952 80.4
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1489.6 965 79.2
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1485.7 966 78.4
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1481.8 912 80.8
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1478.8 964 79.1
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1476.5 967 77.1
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1475.7 961 79.1
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1474.5 965 78.5
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1473.8 960 79.1
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1473.0 956 76.9
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1471.4 961 78.9
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 957 79.0
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1470.7 955 79.2
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1468.8 964 78.6
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1468.0 962 79.1
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1467.6 987 77.8
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1467.6 959 78.2
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1464.5 963 76.5
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1463.7 963 77.7
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1463.4 958 78.3
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1462.6 967 78.3
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1461.4 956 78.8
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1461.0 965 78.2
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1461.0 958 77.9
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1461.0 966 78.5
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1460.3 969 78.6
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1460.3 964 76.8
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1459.1 914 79.1
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1456.8 958 77.6
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1456.4 963 76.0
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1455.7 969 78.3
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1455.7 964 77.0
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1455.3 964 77.0
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1453.7 962 76.4
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1453.7 963 78.2
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1453.3 960 76.7
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1450.3 915 77.9
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1449.9 965 76.2
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1449.9 962 77.5
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1449.9 962 76.9
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1449.9 964 76.8
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1449.5 962 76.8
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1448.0 960 76.7
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1447.2 958 76.0
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1444.9 962 77.0
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1443.3 961 75.8
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1442.2 962 75.8
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1441.4 909 78.7
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1439.5 960 76.8
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1436.8 960 77.5
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1435.6 972 77.0
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1432.9 960 76.4
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1432.2 960 76.1
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1429.8 967 75.3
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1429.1 961 77.2
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1428.3 965 73.1
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1427.5 961 77.7
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1427.5 979 74.6
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1423.3 965 72.8
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1422.1 961 75.1
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1422.1 960 76.7
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1418.3 968 77.1
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1418.3 962 75.9
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1416.7 972 75.8
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1414.8 981 75.8
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1414.4 969 75.7
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1414.1 983 76.0
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1414.1 983 76.0
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1411.0 960 74.5
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1409.0 970 75.9
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1408.7 960 77.4
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1407.9 986 72.8
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1405.2 956 74.9
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1402.9 922 73.6
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1398.6 944 76.0
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1397.9 976 75.5
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1397.9 967 75.7
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1395.9 977 74.8
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1394.8 984 72.9
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1394.4 918 74.2
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1391.3 909 75.7
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1382.9 965 73.2
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1382.5 948 71.8
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1374.8 1189 63.6
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1366.3 911 74.1
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1362.1 954 73.7
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1351.3 922 73.6
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1350.1 915 75.0
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1346.3 954 70.2
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1343.6 957 71.9
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1334.7 823 77.3
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1334.3 960 68.2
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1327.8 960 74.3
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1322.8 957 69.5
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1322.8 952 70.3
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1309.3 834 76.7
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1286.2 906 71.6
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1276.5 910 68.2
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1269.2 924 68.5
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1259.6 785 80.6
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1248.4 786 77.6
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1218.4 931 64.4
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1179.9 726 79.1
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1150.2 786 70.4
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1138.6 934 62.8
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1130.2 959 61.4
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1120.5 985 58.4
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1119.8 931 61.1
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1083.2 690 77.7
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.2e-308 1063.1 958 59.8
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 2.3e-299 1032.3 720 74.9
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 9.3e-293 1010.4 662 77.0
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 7.2e-277 957.6 789 59.7
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 3.8e-270 935.3 592 79.6
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.4e-264 916.0 673 71.9
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.3e-241 840.5 567 76.2
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 2.8e-220 769.6 525 72.6
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.8e-211 740.3 603 64.5
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 3.2e-200 703.0 441 83.7
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.5e-197 693.3 502 69.3
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 6.9e-187 658.7 408 84.3
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.1e-181 641.3 386 80.6
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 7.9e-175 618.6 984 38.8
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 6.7e-150 535.8 403 65.0
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 1.3e-148 531.6 417 63.3
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 2.2e-137 494.2 829 37.6
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 1.8e-118 431.4 480 52.3
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 1.0e-110 405.6 223 87.0
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 5.2e-110 403.3 253 77.5
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.7e-108 398.3 1052 27.9
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 4.3e-104 383.6 279 68.5
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.7e-100 371.7 843 31.7
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 2.2e-92 344.7 253 67.2
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 2.2e-92 344.7 253 67.2
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 1.1e-91 342.4 365 47.1
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 7.8e-82 309.7 255 62.7
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 4.3e-80 303.9 286 59.1
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.1e-54 219.5 148 71.6
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.1e-50 203.8 174 50.6
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 5.1e-49 200.7 149 65.1
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 5.1e-49 200.7 149 65.1
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 6.9e-46 190.3 139 66.2
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 3.9e-41 174.5 141 55.3
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.3e-40 171.0 118 67.8
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.7e-39 169.1 101 80.2
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 2.2e-39 168.7 99 78.8
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 4.1e-38 164.5 153 53.6
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.8e-36 157.9 243 42.0
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.6e-34 151.4 76 88.2
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.1e-34 150.6 76 88.2
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.0e-33 149.8 76 86.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.4e-33 149.4 75 89.3
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.4e-33 149.4 118 67.8
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.1e-32 146.4 88 80.7
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 5.7e-32 144.1 114 64.9
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 9.7e-32 143.3 78 82.1
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.3e-31 142.9 74 86.5
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 3.7e-31 141.4 98 73.5
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.5e-27 127.5 129 54.3
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 2.1e-26 125.6 123 52.0
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.7e-26 124.4 65 89.2
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 8.0e-26 123.6 656 22.1
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.1e-22 113.2 95 55.8
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 5.3e-22 110.9 128 50.0
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 4.0e-17 94.7 123 43.1
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 5.2e-17 94.4 122 42.6
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 1.4e-14 86.3 82 53.7
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 4.2e-11 74.7 55 65.5
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 2.1e-10 72.4 39 76.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 7.5e-08 63.9 42 69.0
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 7.5e-08 63.9 48 58.3


User provided reference genes

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