Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 2168.7 1190 100.0
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 2102.4 1173 98.7
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1709.1 1188 79.6
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1681.8 1193 77.3
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1672.9 1189 78.6
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1666.0 1184 78.1
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1664.0 1186 77.2
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1658.3 1187 77.1
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1651.3 1187 76.8
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1650.2 1186 77.7
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1649.8 1188 76.9
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1640.6 1183 75.8
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1640.2 1172 75.6
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1638.6 1188 76.2
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1638.6 1188 76.0
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1635.2 1186 76.5
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1632.8 1188 75.6
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1626.3 1176 77.0
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1619.8 1191 74.2
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1619.0 1153 76.0
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1617.1 1191 74.1
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1616.3 1180 75.4
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1614.0 1186 74.5
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1613.6 1186 74.5
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1612.0 1201 75.1
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1607.0 1175 74.8
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1603.6 1198 72.5
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1600.1 1182 75.5
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1595.9 1183 76.5
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1594.3 1192 76.1
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1593.9 1190 73.6
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1593.6 1135 78.0
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1590.1 1192 74.3
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1588.9 1176 74.4
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1585.5 1189 71.4
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1584.7 1188 74.5
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1584.7 1201 73.0
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1584.7 1178 73.8
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1583.9 1197 73.2
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1582.8 1216 71.9
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1580.1 1184 74.3
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1580.1 1240 71.8
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1578.5 1250 71.4
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1575.1 1180 73.6
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1573.9 1203 73.6
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1568.9 1193 72.8
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1567.4 1188 73.0
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1567.4 1196 71.3
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1565.4 1175 71.6
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1563.9 1179 73.1
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1563.5 1156 73.2
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1562.4 1190 75.0
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 1561.6 1222 71.7
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1560.4 1181 72.8
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1559.3 1210 71.2
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1556.6 1183 70.5
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1555.8 1162 74.4
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1540.8 1206 71.2
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1537.3 1174 71.1
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1536.9 1187 71.9
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1536.5 1208 69.6
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1534.6 1184 70.7
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1532.3 1188 71.5
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1530.0 1204 71.2
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1528.5 1172 72.4
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1527.7 1178 72.4
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1511.9 1201 69.4
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1503.0 1121 73.8
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1498.8 1180 69.7
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1491.5 1182 67.5
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1491.1 1164 70.5
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1486.9 1181 67.5
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1486.9 1181 67.5
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1485.7 1189 70.6
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1485.7 1195 69.3
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1483.0 1173 67.5
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1482.6 1176 69.6
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1482.2 1165 70.6
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1481.5 1086 75.6
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1480.7 1179 69.6
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1479.9 1285 66.1
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1479.5 1193 70.8
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1479.2 1181 69.4
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1476.8 1187 69.1
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1476.1 1182 70.8
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1475.7 1183 69.1
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1475.3 1151 70.2
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1469.5 1179 68.2
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1467.6 1383 62.8
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1462.2 1181 69.4
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1459.5 1230 67.2
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1457.6 1180 68.1
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1436.4 1169 69.1
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1431.4 1188 69.5
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1406.7 1173 66.7
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1406.3 1166 68.3
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1369.8 1200 64.1
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1343.9 1184 63.7
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1343.6 1203 63.7
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1331.6 879 77.9
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1312.7 900 77.2
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1303.1 930 75.5
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1293.1 1246 60.7
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1189.5 840 74.5
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1187.6 790 80.3
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1139.8 1201 55.1
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1105.9 760 77.9
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 8.3e-307 1057.4 793 70.6
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.5e-295 1019.2 882 68.5
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 1.1e-269 934.1 972 58.4
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 8.4e-267 924.5 785 66.9
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 5.5e-266 921.8 656 73.0
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 7.9e-257 891.3 941 58.7
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 9.5e-202 708.4 595 65.4
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 2.6e-183 647.1 533 64.5
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 3.9e-179 633.3 961 40.3
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.5e-162 578.2 409 72.1
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.0e-155 555.4 377 76.7
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.1e-152 543.9 292 91.8
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 1.8e-131 474.9 433 62.6
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.1e-120 439.1 307 74.3
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 9.1e-120 436.0 1159 31.5
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.3e-113 415.6 367 67.8
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 1.0e-110 406.0 237 83.1
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.6e-108 398.7 825 36.7
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.2e-106 392.5 313 68.1
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 2.7e-95 354.8 918 30.5
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 3.4e-90 337.8 555 41.8
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 2.5e-85 321.6 181 85.1
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 9.5e-85 319.7 181 83.4
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 9.5e-85 319.7 181 83.4
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 1.7e-81 308.9 171 88.9
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.7e-79 301.6 215 71.6
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.3e-78 299.3 215 71.2
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 9.8e-74 283.1 346 58.1
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 3.2e-72 278.1 224 64.7
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 4.1e-72 277.7 339 52.5
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.3e-69 267.7 325 56.9
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 4.9e-65 254.2 387 47.5
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-61 243.0 201 63.7
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.7e-55 221.9 164 69.5
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.5e-55 221.5 189 70.4
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 1.3e-54 219.5 133 82.7
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.6e-52 212.6 154 71.4
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 4.0e-51 208.0 314 50.6
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 1.1e-48 199.9 319 40.1
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 3.9e-46 191.4 138 69.6
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 6.7e-38 164.1 94 85.1
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 8.1e-36 157.1 155 60.6
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 1.8e-35 156.0 233 49.8
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 4.5e-34 151.4 120 63.3
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.1e-32 146.7 83 84.3
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.2e-32 144.8 91 78.0
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 9.3e-32 143.7 123 62.6
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 3.5e-31 141.7 77 88.3
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.3e-28 133.3 73 87.7
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 1.8e-27 129.4 152 59.2
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.0e-26 125.9 116 67.2
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 2.6e-26 125.6 109 64.2
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 9.3e-24 117.1 87 64.4
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 3.0e-22 112.1 215 41.9
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.5e-21 109.8 84 66.7
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.3e-20 106.7 65 81.5
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 3.7e-20 105.1 83 61.4
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 3.7e-20 105.1 72 70.8
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 1.0e-17 97.1 59 84.7
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 6.5e-17 94.4 68 64.7
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 1.9e-16 92.8 77 61.0
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 2.5e-16 92.4 57 73.7
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 4.2e-16 91.7 56 73.2
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 1.5e-13 83.2 120 44.2
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 2.8e-12 79.0 56 62.5
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 1.8e-11 76.3 46 80.4
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 2.2e-09 69.3 150 34.0
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.4e-08 66.6 45 64.4
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 1.9e-08 66.2 113 43.4
Hma1.2p1_3877F.1_g337870 Hydrangea macrophylla HOM05D003924 ORTHO05D228195 1.0e-06 60.5 53 62.3
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 2.3e-06 59.3 46 56.5
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 3.9e-06 58.5 147 34.7


User provided reference genes

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