Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PRCOL_00000536 Prasinoderma coloniale HOM05D005460 ORTHO05D008059 0.0e+00 2189.1 1137 100.0
Pp3c5_22230 Physcomitrium patens HOM05D005460 ORTHO05D008059 5.6e-143 513.1 1029 34.5
Hund09954 Selenicereus undatus HOM05D005460 ORTHO05D008059 1.1e-141 508.8 1024 35.4
TAR629G3051 Trochodendron aralioides HOM05D005460 ORTHO05D008059 5.2e-141 506.5 1028 34.3
Cc04_g08300 Coffea canephora HOM05D005460 ORTHO05D008059 7.5e-140 502.7 1045 34.5
Lsat_1_v5_gn_4_113721 Lactuca sativa HOM05D005460 ORTHO05D008059 9.9e-140 502.3 1037 34.3
MELO3C017248.2 Cucumis melo HOM05D005460 ORTHO05D008059 1.7e-139 501.5 1029 34.8
CBR_g50975 Chara braunii HOM05D005460 ORTHO05D008059 2.2e-139 501.1 1039 35.2
ECA232G2972 Erigeron canadensis HOM05D005460 ORTHO05D008059 2.9e-139 500.7 1038 33.8
Actinidia04798 Actinidia chinensis HOM05D005460 ORTHO05D008059 8.3e-139 499.2 1031 34.5
Dinv07972 Davidia involucrata HOM05D005460 ORTHO05D008059 1.4e-138 498.4 1026 34.9
Sc04g0003880 Simmondsia chinensis HOM05D005460 ORTHO05D008059 1.3e-136 491.9 1090 33.9
COL.COLO4_27492 Corchorus olitorius HOM05D005460 ORTHO05D008059 1.7e-136 491.5 1048 34.1
Nn3g17530 Nelumbo nucifera HOM05D005460 ORTHO05D008059 2.3e-136 491.1 1028 33.6
Sed0020336 Sechium edule HOM05D005460 ORTHO05D008059 4.3e-135 486.9 1031 34.5
Sopen03g033860 Solanum pennellii HOM05D005460 ORTHO05D008059 5.6e-135 486.5 1029 33.4
Peaxi162Scf00017g03272 Petunia axillaris HOM05D005460 ORTHO05D008059 7.3e-135 486.1 1029 33.8
CsaV3_1G003350 Cucumis sativus L. HOM05D005460 ORTHO05D008059 9.6e-135 485.7 1029 34.7
Nitab4.5_0005994g0060 Nicotiana tabacum HOM05D005460 ORTHO05D008059 9.6e-135 485.7 1029 33.8
AagrBONN_evm.TU.Sc2ySwM_344.3544 Anthoceros agrestis HOM05D005460 ORTHO05D008059 2.1e-134 484.6 1061 33.6
CSS0025897 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 2.1e-134 484.6 1075 32.5
Solyc03g114780.3 Solanum lycopersicum HOM05D005460 ORTHO05D008059 4.7e-134 483.4 1029 33.4
Zm00001eb327130 Zea mays HOM05D005460 ORTHO05D008059 8.1e-134 482.6 1056 33.0
HanXRQChr09g0270461 Helianthus annuus HOM05D005460 ORTHO05D008059 1.1e-133 482.3 1029 33.0
Migut.I00363 Erythranthe guttata HOM05D005460 ORTHO05D008059 1.4e-133 481.9 1037 33.4
Carub.0006s0699 Capsella rubella HOM05D005460 ORTHO05D008059 1.8e-133 481.5 1048 33.9
SGA_v2.0_scaffold25G10948 Striga asiatica HOM05D005460 ORTHO05D008059 2.4e-133 481.1 1029 33.7
QL10p020708 Quercus lobata HOM05D005460 ORTHO05D008059 3.1e-133 480.7 1028 32.9
GSVIVG01008151001 Vitis vinifera HOM05D005460 ORTHO05D008059 5.2e-133 479.9 1035 33.9
HPP92_007735 Vanilla planifolia HOM05D005460 ORTHO05D008059 6.8e-133 479.6 1042 33.1
Thecc.03G107700 Theobroma cacao HOM05D005460 ORTHO05D008059 1.5e-132 478.4 1033 33.3
TWI60G0358 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 3.4e-132 477.2 1028 34.2
TWI60G1488 Tripterygium wilfordii HOM05D005460 ORTHO05D008059 3.4e-132 477.2 1028 34.2
Glyma.06G206000 Glycine max HOM05D005460 ORTHO05D008059 4.4e-132 476.9 1054 33.7
MSTRG.22948 Avicennia marina HOM05D005460 ORTHO05D008059 5.8e-132 476.5 1027 33.2
MCO09G659 Micromonas commoda HOM05D005460 ORTHO05D008059 5.8e-132 476.5 1101 33.8
AL6G18480 Arabidopsis lyrata HOM05D005460 ORTHO05D008059 9.9e-132 475.7 1058 33.0
Ciclev10018555m.g Citrus clementina HOM05D005460 ORTHO05D008059 2.2e-131 474.6 1028 32.9
TPR.G14357 Trifolium pratense HOM05D005460 ORTHO05D008059 3.8e-131 473.8 1046 33.9
Psat1g126760 Pisum sativum HOM05D005460 ORTHO05D008059 4.9e-131 473.4 1046 34.0
arahy.Tifrunner.gnm1.ann1.LBS82T Arachis hypogaea HOM05D005460 ORTHO05D008059 1.9e-130 471.5 1030 33.3
PSO478G1652 Papaver somniferum HOM05D005460 ORTHO05D008059 3.2e-130 470.7 1053 33.4
AT5G08110 Arabidopsis thaliana HOM05D005460 ORTHO05D008059 4.2e-130 470.3 1030 33.4
CiPaw.15G113700 Carya illinoinensis HOM05D005460 ORTHO05D008059 4.2e-130 470.3 1053 33.5
Lj1g0006842 Lotus japonicus HOM05D005460 ORTHO05D008059 4.2e-130 470.3 1049 33.4
Gorai.007G040200 Gossypium raimondii HOM05D005460 ORTHO05D008059 7.1e-130 469.5 1000 33.9
arahy.Tifrunner.gnm1.ann1.N0CKJ9 Arachis hypogaea HOM05D005460 ORTHO05D008059 9.3e-130 469.2 1030 33.5
Medtr2g461560 Medicago truncatula HOM05D005460 ORTHO05D008059 9.3e-130 469.2 1031 34.1
MBI16_g07042_MAGBIO Magnolia biondii HOM05D005460 ORTHO05D008059 2.1e-129 468.0 1074 33.0
Aqoxy3G00547_Aqoxy3G00548 Aquilegia oxysepala HOM05D005460 ORTHO05D008059 2.7e-129 467.6 1024 33.1
MD14G1216300 Malus domestica HOM05D005460 ORTHO05D008059 2.7e-129 467.6 1028 33.1
Cfa017734 Carpinus fangiana HOM05D005460 ORTHO05D008059 3.5e-129 467.2 1053 32.6
Oeu005512.2 Olea europaea HOM05D005460 ORTHO05D008059 6.0e-129 466.5 1009 33.3
Phvul.009G203700 Phaseolus vulgaris HOM05D005460 ORTHO05D008059 1.3e-128 465.3 1043 33.7
AUR62039669 Chenopodium quinoa HOM05D005460 ORTHO05D008059 2.3e-128 464.5 996 33.7
Aa31LG3G18430 Aethionema arabicum HOM05D005460 ORTHO05D008059 6.6e-128 463.0 1022 33.0
CANSAT80G0202 Cannabis sativa HOM05D005460 ORTHO05D008059 8.7e-128 462.6 1080 32.5
VMungo1309G0936 Vigna mungo HOM05D005460 ORTHO05D008059 1.5e-127 461.8 1064 33.2
Sp6g34850 Schrenkiella parvula HOM05D005460 ORTHO05D008059 2.5e-127 461.1 1054 32.3
Os02g0111900 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 7.3e-127 459.5 1042 31.6
Thhalv10012480m.g Eutrema salsugineum HOM05D005460 ORTHO05D008059 1.6e-126 458.4 1022 32.6
RcHm_v2.0_Chr7g0183711 Rosa chinensis HOM05D005460 ORTHO05D008059 2.1e-126 458.0 1071 32.8
Manes.06G081200 Manihot esculenta HOM05D005460 ORTHO05D008059 8.1e-126 456.1 1043 32.8
Lalb_Chr11g0071861 Lupinus albus HOM05D005460 ORTHO05D008059 3.1e-125 454.1 1021 33.6
C09p68840 Brassica napus HOM05D005460 ORTHO05D008059 9.0e-125 452.6 1035 32.5
FvH4_5g13410 Fragaria vesca HOM05D005460 ORTHO05D008059 9.0e-125 452.6 1077 31.9
Prupe.5G209800 Prunus persica HOM05D005460 ORTHO05D008059 1.2e-124 452.2 1051 32.4
THA.LOC104818356 Tarenaya hassleriana HOM05D005460 ORTHO05D008059 1.5e-124 451.8 1028 32.7
Eucgr.K02548 Eucalyptus grandis HOM05D005460 ORTHO05D008059 9.9e-124 449.1 1053 32.0
Gohir.A11G034000 Gossypium hirsutum HOM05D005460 ORTHO05D008059 1.7e-123 448.4 1029 32.3
Duzib068G0250 Durio zibethinus HOM05D005460 ORTHO05D008059 2.2e-123 448.0 1033 32.5
BolC9t59631H Brassica oleracea HOM05D005460 ORTHO05D008059 2.9e-123 447.6 1024 32.4
EL10Ac5g11188 Beta vulgaris HOM05D005460 ORTHO05D008059 4.9e-123 446.8 1073 32.2
FAN08G0483 Fragaria x ananassa HOM05D005460 ORTHO05D008059 8.4e-123 446.0 1077 31.9
Gohir.D11G037400 Gossypium hirsutum HOM05D005460 ORTHO05D008059 8.4e-123 446.0 1029 32.2
A10p28560 Brassica napus HOM05D005460 ORTHO05D008059 3.2e-122 444.1 1023 32.6
BraA10t44905Z Brassica rapa HOM05D005460 ORTHO05D008059 1.0e-120 439.1 1014 32.6
ClCG06G015450 Citrullus lanatus HOM05D005460 ORTHO05D008059 5.3e-117 426.8 1022 32.6
Cpa.g.sc3.237 Carica papaya HOM05D005460 ORTHO05D008059 2.0e-116 424.9 1028 31.8
Rhsim08G0141800 Rhododendron simsii HOM05D005460 ORTHO05D008059 2.6e-116 424.5 1042 32.8
Potri.012G063500 Populus trichocarpa HOM05D005460 ORTHO05D008059 7.6e-116 422.9 1033 30.9
Lj9A438G54 Lonicera japonica HOM05D005460 ORTHO05D008059 1.3e-115 422.2 1045 31.1
SMO203G0199 Selaginella moellendorffii HOM05D005460 ORTHO05D008059 1.7e-115 421.8 915 32.8
BcaB08g37287 Brassica carinata HOM05D005460 ORTHO05D008059 3.8e-115 420.6 1034 31.0
FAN18G2313 Fragaria x ananassa HOM05D005460 ORTHO05D008059 8.4e-115 419.5 1087 31.6
Haze_18509 Corylus avellana HOM05D005460 ORTHO05D008059 1.3e-112 412.1 1100 30.5
DCAR_011574 Daucus carota HOM05D005460 ORTHO05D008059 5.6e-111 406.8 834 34.4
PGR031G2062 Punica granatum HOM05D005460 ORTHO05D008059 2.1e-110 404.8 1076 30.7
AUR62032136 Chenopodium quinoa HOM05D005460 ORTHO05D008059 2.2e-107 394.8 1028 31.0
ATR0827G052 Amborella trichopoda HOM05D005460 ORTHO05D008059 2.9e-107 394.4 879 33.9
CARHR205080 Cardamine hirsuta HOM05D005460 ORTHO05D008059 7.1e-98 363.2 818 32.6
Prupe.5G209300 Prunus persica HOM05D005460 ORTHO05D008059 7.1e-98 363.2 1093 28.3
Nitab4.5_0002467g0140 Nicotiana tabacum HOM05D005460 ORTHO05D008059 4.2e-90 337.4 1029 27.8
Hma1.2p1_2037F.1_g311990 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 2.1e-89 335.1 572 37.4
PGSC0003DMG400024525 Solanum tuberosum HOM05D005460 ORTHO05D008059 1.5e-87 328.9 561 36.7
Cre03.g187700 Chlamydomonas reinhardtii HOM05D005460 ORTHO05D008059 5.9e-84 317.0 1700 25.8
vmacro17637 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 1.1e-82 312.8 1411 25.4
Hma1.2p1_3034F.1_g331890 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 1.4e-64 252.7 320 46.6
CSS0043223 Camellia sinensis var. sinensis HOM05D005460 ORTHO05D008059 1.8e-64 252.3 507 33.5
SEGI_08899 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 1.1e-61 243.0 451 37.5
Pp3s405_10 Physcomitrium patens HOM05D005460 ORTHO05D008059 1.2e-60 239.6 903 25.8
AagrBONN_evm.TU.Sc2ySwM_344.4214 Anthoceros agrestis HOM05D005460 ORTHO05D008059 3.6e-57 228.0 756 27.9
Pp3c7_15450 Physcomitrium patens HOM05D005460 ORTHO05D008059 3.6e-57 228.0 742 27.9
Pp3c7_15456 Physcomitrium patens HOM05D005460 ORTHO05D008059 3.6e-57 228.0 742 27.9
MCO07G109 Micromonas commoda HOM05D005460 ORTHO05D008059 5.7e-55 220.7 1117 26.0
Ah.11g047430 Amaranthus hybridus HOM05D005460 ORTHO05D008059 4.2e-50 204.5 338 39.9
SHI17428 Sapria himalayana HOM05D005460 ORTHO05D008059 1.2e-47 196.4 394 36.5
FAN13G3146 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.4e-45 189.5 352 37.5
SHI17427 Sapria himalayana HOM05D005460 ORTHO05D008059 3.5e-44 184.9 292 39.4
Ca_02784_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 1.0e-43 183.3 252 44.4
Ca_02783_v3 Cicer arietinum L. HOM05D005460 ORTHO05D008059 4.9e-38 164.5 288 38.2
Hma1.2p1_2037F.1_g311980 Hydrangea macrophylla HOM05D005460 ORTHO05D008059 3.2e-37 161.8 303 36.6
SEGI_12628 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 5.6e-34 151.0 186 42.5
Os07g0606500 Oryza sativa ssp. japonica HOM05D005460 ORTHO05D008059 1.2e-23 116.7 101 49.5
Cfa022214 Carpinus fangiana HOM05D005460 ORTHO05D124255 1.5e-23 116.3 120 46.7
Lsat_1_v5_gn_1_69000 Lactuca sativa HOM05D005460 ORTHO05D048358 2.2e-22 112.5 107 55.1
vmacro23112 Vaccinium macrocarpon HOM05D005460 ORTHO05D008059 1.0e-19 103.6 237 30.4
FAN13G2142 Fragaria x ananassa HOM05D005460 ORTHO05D008059 1.1e-18 100.1 68 69.1
SEGI_40089 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 9.0e-08 63.9 144 32.6
SEGI_17125 Sequoiadendron giganteum HOM05D005460 ORTHO05D008059 5.8e-07 61.2 186 29.6
Potri.012G063201 Populus trichocarpa HOM05D005460 ORTHO05D008059 1.7e-06 59.7 194 28.9
SEGI_20731 Sequoiadendron giganteum HOM05D005460 ORTHO05D048358 2.9e-06 58.9 62 48.4


User provided reference genes

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