Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG402017675 Solanum tuberosum HOM05D001072 ORTHO05D006807 0.0e+00 2170.6 1094 100.0
Sopen09g017350 Solanum pennellii HOM05D001072 ORTHO05D006807 0.0e+00 2079.7 1094 95.3
Nitab4.5_0000046g0010 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1854.7 1103 84.3
Nitab4.5_0000684g0150 Nicotiana tabacum HOM05D001072 ORTHO05D006807 0.0e+00 1852.0 1096 84.4
Peaxi162Scf00055g00202 Petunia axillaris HOM05D001072 ORTHO05D006807 0.0e+00 1760.7 1105 81.1
Dinv12245 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1342.4 1101 60.9
Dinv09685 Davidia involucrata HOM05D001072 ORTHO05D006807 0.0e+00 1341.3 1101 60.9
CSS0014731 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1301.6 1101 60.5
CSS0035690 Camellia sinensis var. sinensis HOM05D001072 ORTHO05D006807 0.0e+00 1300.4 1101 60.4
Lj2A1095G44 Lonicera japonica HOM05D001072 ORTHO05D006807 0.0e+00 1292.3 1110 59.6
Actinidia32600 Actinidia chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1277.3 1100 60.0
vmacro02906 Vaccinium macrocarpon HOM05D001072 ORTHO05D006807 0.0e+00 1249.2 1100 58.3
Rhsim13G0062700 Rhododendron simsii HOM05D001072 ORTHO05D006807 0.0e+00 1241.1 1104 57.8
Cc01_g15000 Coffea canephora HOM05D001072 ORTHO05D006807 0.0e+00 1231.9 1101 57.8
CiPaw.13G067600 Carya illinoinensis HOM05D001072 ORTHO05D006807 0.0e+00 1200.3 1106 56.5
Migut.D00839 Erythranthe guttata HOM05D001072 ORTHO05D006807 0.0e+00 1187.9 1096 56.1
QL01p025823 Quercus lobata HOM05D001072 ORTHO05D006807 0.0e+00 1184.9 1105 55.6
Atru.chr1.2576 Acer truncatum HOM05D001072 ORTHO05D006807 0.0e+00 1172.1 1107 54.7
Prupe.6G045900 Prunus persica HOM05D001072 ORTHO05D006807 0.0e+00 1171.8 1107 55.2
MD03G1058100 Malus domestica HOM05D001072 ORTHO05D006807 0.0e+00 1165.6 1105 55.0
MSTRG.21246 Avicennia marina HOM05D001072 ORTHO05D006807 0.0e+00 1159.8 1102 54.8
Sabra19G0130600 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1159.4 1107 54.2
TAR623G1063 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1158.3 1123 54.4
Potri.019G126000 Populus trichocarpa HOM05D001072 ORTHO05D006807 0.0e+00 1157.1 1106 53.3
Duzib168G2177 Durio zibethinus HOM05D001072 ORTHO05D006807 0.0e+00 1150.6 1105 54.1
SGA_v2.0_scaffold20G09297 Striga asiatica HOM05D001072 ORTHO05D006807 0.0e+00 1148.7 1094 55.0
Sabra19G0124000 Salix brachista HOM05D001072 ORTHO05D006807 0.0e+00 1146.0 1132 53.0
Manes.18G136800 Manihot esculenta HOM05D001072 ORTHO05D006807 0.0e+00 1143.6 1104 53.1
Oeu050029.1 Olea europaea HOM05D001072 ORTHO05D006807 0.0e+00 1139.4 1110 54.6
Thecc.09G359500 Theobroma cacao HOM05D001072 ORTHO05D006807 0.0e+00 1134.8 1112 53.4
COL.COLO4_11172 Corchorus olitorius HOM05D001072 ORTHO05D006807 0.0e+00 1134.4 1108 53.5
Cpa.g.sc2.338 Carica papaya HOM05D001072 ORTHO05D006807 0.0e+00 1132.9 1104 55.1
RcHm_v2.0_Chr5g0071961 Rosa chinensis HOM05D001072 ORTHO05D006807 0.0e+00 1132.5 1108 54.1
Haze_24430 Corylus avellana HOM05D001072 ORTHO05D006807 0.0e+00 1129.4 1154 52.7
FAN11G0037 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1129.0 1108 53.8
LjContig00141g0020287 Lotus japonicus HOM05D001072 ORTHO05D006807 0.0e+00 1128.6 1101 54.0
FvH4_3g39950 Fragaria vesca HOM05D001072 ORTHO05D006807 0.0e+00 1127.1 1108 53.6
TAR623G0321 Trochodendron aralioides HOM05D001072 ORTHO05D006807 0.0e+00 1126.7 1123 53.8
FAN16G0450 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1122.5 1080 54.5
CANSAT54G0981 Cannabis sativa HOM05D001072 ORTHO05D006807 0.0e+00 1120.9 1104 53.9
FAN25G0381 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1112.4 1108 53.3
Gorai.003G151000 Gossypium raimondii HOM05D001072 ORTHO05D006807 0.0e+00 1111.3 1113 51.9
Gohir.D03G143700 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1108.6 1113 51.7
Glyma.02G232900 Glycine max HOM05D001072 ORTHO05D006807 0.0e+00 1099.3 1099 52.7
FAN21G1089 Fragaria x ananassa HOM05D001072 ORTHO05D006807 0.0e+00 1097.0 1149 51.7
Gohir.A03G024800 Gossypium hirsutum HOM05D001072 ORTHO05D006807 0.0e+00 1094.7 1113 51.6
Phvul.008G250900 Phaseolus vulgaris HOM05D001072 ORTHO05D006807 0.0e+00 1090.9 1098 52.6
arahy.Tifrunner.gnm1.ann1.QD7CJP Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1090.5 1098 52.8
MELO3C020494.2 Cucumis melo HOM05D001072 ORTHO05D006807 0.0e+00 1090.5 1108 52.4
HanXRQChr10g0312111 Helianthus annuus HOM05D001072 ORTHO05D006807 0.0e+00 1090.1 1098 53.2
arahy.Tifrunner.gnm1.ann1.XX59BG Arachis hypogaea HOM05D001072 ORTHO05D006807 0.0e+00 1087.4 1098 52.6
VMungo0647G0153 Vigna mungo HOM05D001072 ORTHO05D006807 0.0e+00 1087.0 1098 52.5
Lalb_Chr04g0251881 Lupinus albus HOM05D001072 ORTHO05D006807 0.0e+00 1086.2 1102 53.3
Lsat_1_v5_gn_8_108741 Lactuca sativa HOM05D001072 ORTHO05D006807 0.0e+00 1082.4 1108 52.6
Psat2g054080 Pisum sativum HOM05D001072 ORTHO05D006807 0.0e+00 1080.5 1102 51.5
Ca_05680_v3 Cicer arietinum L. HOM05D001072 ORTHO05D006807 0.0e+00 1079.7 1101 51.2
Ciclev10000015m.g Citrus clementina HOM05D001072 ORTHO05D006807 0.0e+00 1077.8 1118 51.3
CsaV3_1G036730 Cucumis sativus L. HOM05D001072 ORTHO05D006807 7.5e-312 1074.3 1109 51.8
Medtr5g074510 Medicago truncatula HOM05D001072 ORTHO05D006807 5.7e-310 1067.8 1100 50.9
TPR.G25340 Trifolium pratense HOM05D001072 ORTHO05D006807 9.0e-308 1060.4 1073 51.7
TWI31G1315 Tripterygium wilfordii HOM05D001072 ORTHO05D006807 4.5e-307 1058.1 1109 50.4
ClCG03G000170 Citrullus lanatus HOM05D001072 ORTHO05D006807 2.5e-305 1052.4 1079 52.3
DCAR_018643 Daucus carota HOM05D001072 ORTHO05D006807 2.7e-304 1048.9 1100 50.4
PGR119G0697 Punica granatum HOM05D001072 ORTHO05D006807 1.4e-300 1036.6 1099 50.1
MBI03_g13043_MAGBIO Magnolia biondii HOM05D001072 ORTHO05D006807 9.1e-300 1033.9 1144 49.3
Sed0011357 Sechium edule HOM05D001072 ORTHO05D006807 4.5e-299 1031.6 1106 50.6
THA.LOC104810689 Tarenaya hassleriana HOM05D001072 ORTHO05D006807 2.2e-298 1029.2 1094 51.9
Nn2g11057 Nelumbo nucifera HOM05D001072 ORTHO05D006807 4.2e-297 1025.0 1126 50.5
Sc06g0008120 Simmondsia chinensis HOM05D001072 ORTHO05D006807 2.6e-294 1015.8 1112 50.0
QL04p095953 Quercus lobata HOM05D001072 ORTHO05D006807 6.3e-293 1011.1 889 58.7
Aa31LG11G200 Aethionema arabicum HOM05D001072 ORTHO05D006807 2.0e-291 1006.1 1105 50.6
ECA236G3191 Erigeron canadensis HOM05D001072 ORTHO05D006807 5.9e-291 1004.6 1050 52.1
Thhalv10012416m.g Eutrema salsugineum HOM05D001072 ORTHO05D006807 2.5e-289 999.2 1098 50.4
Sp6g20090 Schrenkiella parvula HOM05D001072 ORTHO05D006807 2.8e-285 985.7 1098 49.7
Eucgr.J01850 Eucalyptus grandis HOM05D001072 ORTHO05D006807 6.3e-285 984.6 1097 49.0
AL8G34570 Arabidopsis lyrata HOM05D001072 ORTHO05D006807 5.3e-284 981.5 1097 50.1
Carub.0008s1900 Capsella rubella HOM05D001072 ORTHO05D006807 2.6e-283 979.2 1097 49.7
BolC9t57885H Brassica oleracea HOM05D001072 ORTHO05D006807 1.1e-281 973.8 1096 49.2
BolC3t13881H Brassica oleracea HOM05D001072 ORTHO05D006807 9.4e-281 970.7 1106 49.7
CARHR272240 Cardamine hirsuta HOM05D001072 ORTHO05D006807 1.6e-280 969.9 1097 49.7
AT5G58410 Arabidopsis thaliana HOM05D001072 ORTHO05D006807 2.1e-280 969.5 1101 49.5
A03p12250 Brassica napus HOM05D001072 ORTHO05D006807 1.8e-279 966.5 1088 49.2
AUR62025311 Chenopodium quinoa HOM05D001072 ORTHO05D006807 5.2e-279 964.9 1101 47.1
BcaC04g19869 Brassica carinata HOM05D001072 ORTHO05D006807 5.7e-278 961.4 1087 49.1
BraA03t10536Z Brassica rapa HOM05D001072 ORTHO05D006807 5.7e-278 961.4 1096 49.7
A10p15850 Brassica napus HOM05D001072 ORTHO05D006807 9.7e-278 960.7 1088 49.2
C09p50300 Brassica napus HOM05D001072 ORTHO05D006807 9.7e-278 960.7 1087 48.9
C03p14380 Brassica napus HOM05D001072 ORTHO05D006807 1.3e-277 960.3 1096 49.7
BraA10t43640Z Brassica rapa HOM05D001072 ORTHO05D006807 2.2e-277 959.5 1088 49.1
AUR62028316 Chenopodium quinoa HOM05D001072 ORTHO05D006807 2.2e-277 959.5 1101 47.2
BcaB08g36177 Brassica carinata HOM05D001072 ORTHO05D006807 3.1e-276 955.7 1094 49.1
PSO170G6524 Papaver somniferum HOM05D001072 ORTHO05D006807 4.5e-275 951.8 1122 47.8
Aqoxy4G02167 Aquilegia oxysepala HOM05D001072 ORTHO05D006807 1.0e-274 950.7 1116 47.7
PSO017G5353 Papaver somniferum HOM05D001072 ORTHO05D006807 5.5e-273 944.9 1116 47.0
EL10Ac8g18974 Beta vulgaris HOM05D001072 ORTHO05D006807 5.2e-271 938.3 1107 46.6
unitig_0.g201 Utricularia gibba HOM05D001072 ORTHO05D006807 4.4e-262 908.7 1088 44.9
BcaB01g04524 Brassica carinata HOM05D001072 ORTHO05D006807 6.6e-258 894.8 1086 46.8
ATR0681G329 Amborella trichopoda HOM05D001072 ORTHO05D006807 4.9e-253 878.6 1153 44.1
HPP92_012011 Vanilla planifolia HOM05D001072 ORTHO05D006807 1.6e-248 863.6 1136 42.3
Hund08884 Selenicereus undatus HOM05D001072 ORTHO05D006807 1.6e-240 837.0 1057 44.9
CDE04G3416 Ceratophyllum demersum HOM05D001072 ORTHO05D006807 4.3e-233 812.4 1135 40.2
Zm00001eb093280 Zea mays HOM05D001072 ORTHO05D006807 1.7e-229 800.4 1133 40.4
Os01g0977600 Oryza sativa ssp. japonica HOM05D001072 ORTHO05D006807 2.2e-221 773.5 1142 40.6
Solyc09g055260.4 Solanum lycopersicum HOM05D001072 ORTHO05D006807 5.9e-174 615.9 339 89.1
Mapoly0076s0060 Marchantia polymorpha HOM05D001072 ORTHO05D006807 1.6e-171 607.8 1072 36.4
AagrBONN_evm.TU.Sc2ySwM_344.918 Anthoceros agrestis HOM05D001072 ORTHO05D006807 9.1e-167 592.0 1188 34.2
Pp3c11_1040 Physcomitrium patens HOM05D001072 ORTHO05D006807 9.8e-161 572.0 1026 35.0
Oeu050026.1 Olea europaea HOM05D001072 ORTHO05D006807 2.0e-158 564.3 1102 35.4
SMO367G0609 Selaginella moellendorffii HOM05D001072 ORTHO05D006807 8.3e-128 462.6 832 37.5
PRCOL_00002801 Prasinoderma coloniale HOM05D001072 ORTHO05D006807 8.2e-59 233.4 551 30.3
MCO05G029 Micromonas commoda HOM05D001072 ORTHO05D006807 3.3e-52 211.5 218 45.9
CBR_g30899 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-52 210.3 632 29.3
Cre06.g252100 Chlamydomonas reinhardtii HOM05D001072 ORTHO05D006807 3.5e-49 201.4 206 46.1
QL04p095957 Quercus lobata HOM05D001072 ORTHO05D006807 3.8e-32 144.8 161 44.7
Cfa024964 Carpinus fangiana HOM05D001072 ORTHO05D006807 4.4e-28 131.3 209 31.6
Glyma.14G200551 Glycine max HOM05D001072 ORTHO05D006807 1.3e-24 119.8 95 58.9
Ca_27012_v3 Cicer arietinum L. HOM05D000103 ORTHO05D006807 8.6e-16 90.5 183 28.4
Cpa.g.sc2.314 Carica papaya HOM05D001072 ORTHO05D006807 4.7e-14 84.7 127 37.0
PSO017G5325 Papaver somniferum HOM05D001072 ORTHO05D006807 4.7e-14 84.7 107 40.2
PSO170G1906 Papaver somniferum HOM05D001072 ORTHO05D006807 1.2e-12 80.1 64 54.7
Psat0s3437g0080 Pisum sativum HOM05D001072 ORTHO05D006807 1.9e-07 62.8 84 44.0
CBR_g30901 Chara braunii HOM05D001072 ORTHO05D006807 1.2e-06 60.1 214 26.2


User provided reference genes

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