Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400034293 Solanum tuberosum HOM05D000188 ORTHO05D003976 1.5e-98 362.8 184 100.0
Solyc08g007110.4 Solanum lycopersicum HOM05D000188 ORTHO05D003976 2.2e-89 332.4 170 99.4
Sopen08g003060 Solanum pennellii HOM05D000188 ORTHO05D003976 2.2e-89 332.4 170 99.4
Nitab4.5_0005487g0030 Nicotiana tabacum HOM05D000188 ORTHO05D003976 1.9e-77 292.7 182 84.1
Nitab4.5_0001444g0010 Nicotiana tabacum HOM05D000188 ORTHO05D003976 2.5e-77 292.4 174 89.7
PGSC0003DMG400001863 Solanum tuberosum HOM05D000188 ORTHO05D003976 6.8e-75 284.3 176 83.5
Sopen08g026010 Solanum pennellii HOM05D000188 ORTHO05D003976 8.3e-73 277.3 179 82.7
Solyc08g077420.3 Solanum lycopersicum HOM05D000188 ORTHO05D003976 1.1e-72 276.9 179 83.2
Nitab4.5_0004832g0040 Nicotiana tabacum HOM05D000188 ORTHO05D003976 3.2e-72 275.4 174 83.9
CAN.G572.54 Capsicum annuum HOM05D000188 ORTHO05D003976 2.5e-69 265.8 183 78.1
Peaxi162Scf00102g00730 Petunia axillaris HOM05D000188 ORTHO05D003976 4.3e-69 265.0 183 77.0
Cc08_g01700 Coffea canephora HOM05D000188 ORTHO05D003976 2.1e-68 262.7 184 75.5
Oeu053049.1 Olea europaea HOM05D000188 ORTHO05D003976 2.2e-65 252.7 175 74.9
Lsat_1_v5_gn_6_68181 Lactuca sativa HOM05D000188 ORTHO05D003976 8.4e-65 250.8 181 75.7
Actinidia25934 Actinidia chinensis HOM05D000188 ORTHO05D003976 5.4e-64 248.1 172 75.6
Dinv25173 Davidia involucrata HOM05D000188 ORTHO05D003976 5.4e-64 248.1 182 76.4
GSVIVG01013247001 Vitis vinifera HOM05D000188 ORTHO05D003976 2.7e-63 245.7 175 73.7
Sc01g0007820 Simmondsia chinensis HOM05D000188 ORTHO05D003976 7.8e-63 244.2 179 70.9
Oeu039350.3 Olea europaea HOM05D000188 ORTHO05D003976 1.0e-62 243.8 184 72.3
Migut.E00804 Erythranthe guttata HOM05D000188 ORTHO05D003976 1.7e-62 243.0 176 79.5
Migut.E00902 Erythranthe guttata HOM05D000188 ORTHO05D003976 3.0e-62 242.3 176 77.8
Peaxi162Scf00084g00613 Petunia axillaris HOM05D000188 ORTHO05D003976 5.1e-62 241.5 188 69.7
Oeu019051.3 Olea europaea HOM05D000188 ORTHO05D003976 1.1e-61 240.4 179 76.0
SGA_v2.0_scaffold20G09241 Striga asiatica HOM05D000188 ORTHO05D003976 7.3e-61 237.7 180 72.2
Ca_24627_v3 Cicer arietinum L. HOM05D000188 ORTHO05D003976 2.1e-60 236.1 177 69.5
Rhsim07G0121100 Rhododendron simsii HOM05D000188 ORTHO05D003976 2.8e-60 235.7 187 69.0
DCAR_008304 Daucus carota HOM05D000188 ORTHO05D003976 3.6e-60 235.3 176 72.2
CSS0042114 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D003976 6.2e-60 234.6 177 74.6
Glyma.01G202600 Glycine max HOM05D000188 ORTHO05D003976 1.4e-59 233.4 178 69.1
Nn6g33690 Nelumbo nucifera HOM05D000188 ORTHO05D003976 1.4e-59 233.4 173 69.4
Phvul.002G003300 Phaseolus vulgaris HOM05D000188 ORTHO05D003976 1.4e-59 233.4 180 68.3
HanXRQChr03g0086991 Helianthus annuus HOM05D000188 ORTHO05D003976 2.4e-59 232.6 198 68.2
vmacro14146 Vaccinium macrocarpon HOM05D000188 ORTHO05D003976 2.4e-59 232.6 186 69.4
MBI04_g03344_MAGBIO Magnolia biondii HOM05D000188 ORTHO05D003976 3.1e-59 232.3 171 71.9
Actinidia31476 Actinidia chinensis HOM05D000188 ORTHO05D003976 4.0e-59 231.9 171 69.0
Lj2g0002868 Lotus japonicus HOM05D000188 ORTHO05D003976 4.0e-59 231.9 176 69.9
Psat2g175000 Pisum sativum HOM05D000188 ORTHO05D003976 4.0e-59 231.9 176 69.3
VMungo1215G0424 Vigna mungo HOM05D000188 ORTHO05D003976 5.3e-59 231.5 180 67.8
TPR.G22716 Trifolium pratense HOM05D000188 ORTHO05D003976 1.2e-58 230.3 177 68.9
arahy.Tifrunner.gnm1.ann1.FN6SHM Arachis hypogaea HOM05D000188 ORTHO05D003976 1.5e-58 229.9 181 68.0
arahy.Tifrunner.gnm1.ann1.L380RS Arachis hypogaea HOM05D000188 ORTHO05D003976 1.5e-58 229.9 181 68.0
TAR375G0650 Trochodendron aralioides HOM05D000188 ORTHO05D003976 1.5e-58 229.9 167 68.9
CANSAT21G0831 Cannabis sativa HOM05D000188 ORTHO05D003976 3.4e-58 228.8 180 67.2
TAR629G0968 Trochodendron aralioides HOM05D000188 ORTHO05D003976 3.4e-58 228.8 173 69.9
Lalb_Chr16g0379271 Lupinus albus HOM05D000188 ORTHO05D003976 4.4e-58 228.4 182 70.9
DCAR_005597 Daucus carota HOM05D000188 ORTHO05D003976 5.8e-58 228.0 173 69.4
Lj8C288T9 Lonicera japonica HOM05D000188 ORTHO05D003976 7.6e-58 227.6 177 70.1
MD06G1042600 Malus domestica HOM05D000188 ORTHO05D003976 7.6e-58 227.6 183 67.2
Haze_08316 Corylus avellana HOM05D000188 ORTHO05D003976 9.9e-58 227.3 194 64.4
Nn1g00076 Nelumbo nucifera HOM05D000188 ORTHO05D003976 1.3e-57 226.9 172 69.2
Nn1g00669 Nelumbo nucifera HOM05D000188 ORTHO05D003976 1.3e-57 226.9 172 69.2
Prupe.5G049500 Prunus persica HOM05D000188 ORTHO05D003976 1.3e-57 226.9 183 67.2
SGA_v2.0_scaffold6G03173 Striga asiatica HOM05D000188 ORTHO05D003976 1.3e-57 226.9 176 72.7
CSS0041371 Camellia sinensis var. sinensis HOM05D000188 ORTHO05D003976 1.7e-57 226.5 175 73.1
ClCG10G001940 Citrullus lanatus HOM05D000188 ORTHO05D003976 1.7e-57 226.5 180 66.1
MELO3C013879.2 Cucumis melo HOM05D000188 ORTHO05D003976 1.7e-57 226.5 180 66.1
Lsat_1_v5_gn_6_89421 Lactuca sativa HOM05D000188 ORTHO05D003976 2.2e-57 226.1 193 69.9
QL12p007494 Quercus lobata HOM05D000188 ORTHO05D003976 2.2e-57 226.1 197 63.5
Cfa012367 Carpinus fangiana HOM05D000188 ORTHO05D003976 8.4e-57 224.2 194 66.5
FAN04G1896 Fragaria x ananassa HOM05D000188 ORTHO05D003976 1.4e-56 223.4 186 67.7
FAN13G2517 Fragaria x ananassa HOM05D000188 ORTHO05D003976 1.9e-56 223.0 186 67.7
Glyma.11G040200 Glycine max HOM05D000188 ORTHO05D003976 1.9e-56 223.0 181 68.5
FvH4_5g20920 Fragaria vesca HOM05D000188 ORTHO05D003976 2.4e-56 222.6 187 67.4
PSO782G3028 Papaver somniferum HOM05D000188 ORTHO05D003976 4.2e-56 221.9 187 67.4
RcHm_v2.0_Chr7g0207971 Rosa chinensis HOM05D000188 ORTHO05D003976 4.2e-56 221.9 188 64.4
PSO063G6653 Papaver somniferum HOM05D000188 ORTHO05D003976 5.4e-56 221.5 187 66.8
CsaV3_3G002080 Cucumis sativus L. HOM05D000188 ORTHO05D003976 9.3e-56 220.7 180 64.4
MD16G1268400 Malus domestica HOM05D000188 ORTHO05D003976 9.3e-56 220.7 180 66.7
FAN18G0956 Fragaria x ananassa HOM05D000188 ORTHO05D003976 1.6e-55 219.9 187 65.8
FAN08G2510 Fragaria x ananassa HOM05D000188 ORTHO05D003976 2.7e-55 219.2 187 66.8
Lalb_Chr05g0214101 Lupinus albus HOM05D000188 ORTHO05D003976 2.7e-55 219.2 182 65.4
Medtr5g013820 Medicago truncatula HOM05D000188 ORTHO05D003976 2.7e-55 219.2 175 68.0
Sed0018558 Sechium edule HOM05D000188 ORTHO05D003976 4.6e-55 218.4 183 67.8
Lalb_Chr09g0323981 Lupinus albus HOM05D000188 ORTHO05D003976 1.0e-54 217.2 182 64.8
AUR62007211 Chenopodium quinoa HOM05D000188 ORTHO05D003976 1.1e-53 213.8 195 64.1
TWI15G0852 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 3.3e-53 212.2 186 67.2
ECA233G4074 Erigeron canadensis HOM05D000188 ORTHO05D003976 4.3e-53 211.8 189 66.1
EL10Ac5g12207 Beta vulgaris HOM05D000188 ORTHO05D003976 3.6e-52 208.8 191 65.4
CARHR174460 Cardamine hirsuta HOM05D000188 ORTHO05D003976 3.6e-52 208.8 187 61.0
Potri.003G086400 Populus trichocarpa HOM05D000188 ORTHO05D003976 1.4e-51 206.8 187 59.9
Ah.07g199630 Amaranthus hybridus HOM05D000188 ORTHO05D003976 1.8e-51 206.5 187 65.2
AL8G11270 Arabidopsis lyrata HOM05D000188 ORTHO05D003976 2.4e-51 206.1 187 61.5
Eucgr.E00323 Eucalyptus grandis HOM05D000188 ORTHO05D003976 2.4e-51 206.1 184 64.1
Potri.001G148100 Populus trichocarpa HOM05D000188 ORTHO05D003976 2.4e-51 206.1 180 60.6
PGR042G0017 Punica granatum HOM05D000188 ORTHO05D003976 2.4e-51 206.1 182 66.5
TWI60G1508 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 3.1e-51 205.7 186 59.7
C02p48200 Brassica napus HOM05D000188 ORTHO05D003976 5.3e-51 204.9 177 63.3
BolC2t10853H Brassica oleracea HOM05D000188 ORTHO05D003976 5.3e-51 204.9 177 63.3
CDE06G0953 Ceratophyllum demersum HOM05D000188 ORTHO05D003976 5.3e-51 204.9 167 64.1
AUR62018790 Chenopodium quinoa HOM05D000188 ORTHO05D003976 5.3e-51 204.9 188 63.8
HPP92_014871 Vanilla planifolia HOM05D000188 ORTHO05D003976 6.9e-51 204.5 173 60.7
CiPaw.11G086500 Carya illinoinensis HOM05D000188 ORTHO05D003976 1.2e-50 203.8 195 61.0
THA.LOC104806689 Tarenaya hassleriana HOM05D000188 ORTHO05D003976 1.5e-50 203.4 190 60.0
TWI81G0847 Tripterygium wilfordii HOM05D000188 ORTHO05D003976 5.8e-50 201.4 186 59.7
Aqoxy3G02561 Aquilegia oxysepala HOM05D000188 ORTHO05D003976 7.6e-50 201.1 186 61.8
Sabra01G0117900 Salix brachista HOM05D000188 ORTHO05D003976 7.6e-50 201.1 184 59.2
Cpa.g.sc29.1 Carica papaya HOM05D000188 ORTHO05D003976 9.9e-50 200.7 192 62.0
Manes.17G021900 Manihot esculenta HOM05D000188 ORTHO05D003976 9.9e-50 200.7 193 57.0
A02p30660 Brassica napus HOM05D000188 ORTHO05D003976 2.2e-49 199.5 180 64.4
CDE12G0177 Ceratophyllum demersum HOM05D000188 ORTHO05D003976 2.9e-49 199.1 167 61.7
Sabra03G0056200 Salix brachista HOM05D000188 ORTHO05D003976 3.8e-49 198.7 190 57.9
AT5G47010 Arabidopsis thaliana HOM05D000188 ORTHO05D003976 1.1e-48 197.2 187 62.6
BraA02t08082Z Brassica rapa HOM05D000188 ORTHO05D003976 1.4e-48 196.8 180 63.9
Sp2g11810 Schrenkiella parvula HOM05D000188 ORTHO05D003976 1.4e-48 196.8 190 62.6
Carub.0008s0082 Capsella rubella HOM05D000188 ORTHO05D003976 2.4e-48 196.1 185 61.1
Ah.12g053730 Amaranthus hybridus HOM05D000188 ORTHO05D003976 3.2e-48 195.7 200 60.0
Thhalv10000743m.g Eutrema salsugineum HOM05D000188 ORTHO05D003976 4.2e-48 195.3 187 58.8
Aa31LG9G5970 Aethionema arabicum HOM05D000188 ORTHO05D003976 4.6e-47 191.8 186 62.9
Sabra01G0116400 Salix brachista HOM05D000188 ORTHO05D003976 4.6e-47 191.8 184 60.9
Gorai.003G179500 Gossypium raimondii HOM05D000188 ORTHO05D003976 7.9e-47 191.0 186 64.0
Gohir.D03G169400 Gossypium hirsutum HOM05D000188 ORTHO05D003976 1.8e-46 189.9 186 64.0
Duzib205G1433 Durio zibethinus HOM05D000188 ORTHO05D003976 3.0e-46 189.1 183 60.7
Gohir.D09G192400 Gossypium hirsutum HOM05D000188 ORTHO05D003976 1.1e-45 187.2 167 61.1
Hund14450 Selenicereus undatus HOM05D000188 ORTHO05D003976 1.9e-45 186.4 180 61.1
Gohir.A03G003000 Gossypium hirsutum HOM05D000188 ORTHO05D003976 9.6e-45 184.1 186 62.4
Gohir.D08G180800 Gossypium hirsutum HOM05D000188 ORTHO05D003976 9.6e-45 184.1 183 61.7
Gorai.004G189700 Gossypium raimondii HOM05D000188 ORTHO05D003976 9.6e-45 184.1 183 61.7
Gorai.006G215300 Gossypium raimondii HOM05D000188 ORTHO05D003976 9.6e-45 184.1 169 62.1
Gohir.A09G197800 Gossypium hirsutum HOM05D000188 ORTHO05D003976 2.1e-44 183.0 167 60.5
Ciclev10033615m.g Citrus clementina HOM05D000188 ORTHO05D003976 3.7e-44 182.2 193 59.1
COL.COLO4_17123 Corchorus olitorius HOM05D000188 ORTHO05D003976 4.8e-44 181.8 186 61.3
Duzib068G0921 Durio zibethinus HOM05D000188 ORTHO05D003976 1.8e-43 179.9 179 62.0
Thecc.03G235600 Theobroma cacao HOM05D000188 ORTHO05D003976 3.1e-43 179.1 186 60.8
ATR1136G154 Amborella trichopoda HOM05D000188 ORTHO05D003976 6.9e-43 177.9 169 57.4
Gohir.A08G160500 Gossypium hirsutum HOM05D000188 ORTHO05D003976 2.6e-42 176.0 183 59.6
Atru.chr6.1792 Acer truncatum HOM05D000188 ORTHO05D003976 1.0e-41 174.1 202 50.0
Nitab4.5_0008709g0020 Nicotiana tabacum HOM05D000188 ORTHO05D003976 1.0e-41 174.1 170 55.3
Zm00001eb105540 Zea mays HOM05D000188 ORTHO05D003976 1.3e-41 173.7 195 51.3
AagrBONN_evm.TU.Sc2ySwM_117.2896 Anthoceros agrestis HOM05D000188 ORTHO05D003976 1.4e-40 170.2 171 54.4
Mapoly0029s0126 Marchantia polymorpha HOM05D000188 ORTHO05D003976 5.5e-40 168.3 165 55.2
SEGI_12247 Sequoiadendron giganteum HOM05D000188 ORTHO05D003976 5.1e-38 161.8 177 53.1
SEGI_28600 Sequoiadendron giganteum HOM05D000188 ORTHO05D003976 5.1e-38 161.8 177 53.1
Zm00001eb322020 Zea mays HOM05D000188 ORTHO05D003976 1.5e-37 160.2 192 50.5
CAN.G845.27 Capsicum annuum HOM05D000188 ORTHO05D003976 5.8e-34 148.3 68 94.1
Psat0s4928g0040 Pisum sativum HOM05D000188 ORTHO05D003976 2.5e-32 142.9 80 78.8
Pp3c23_9370 Physcomitrium patens HOM05D000188 ORTHO05D003976 4.2e-32 142.1 181 46.4
vmacro00364 Vaccinium macrocarpon HOM05D000188 ORTHO05D003976 6.1e-31 138.3 185 55.7
Dinv28904 Davidia involucrata HOM05D000188 ORTHO05D003976 1.3e-30 137.1 68 89.7
CiPaw.12G059100 Carya illinoinensis HOM05D000188 ORTHO05D003976 2.5e-29 132.9 68 85.3
Pp3c20_16510 Physcomitrium patens HOM05D000188 ORTHO05D003976 7.7e-26 121.3 181 43.1
CBR_g8052 Chara braunii HOM05D000188 ORTHO05D003976 1.3e-25 120.6 196 38.8
Lj2C248G9 Lonicera japonica HOM05D000188 ORTHO05D003976 2.2e-25 119.8 137 59.9
CBR_g39626 Chara braunii HOM05D000188 ORTHO05D003976 8.5e-25 117.9 210 39.0
unitig_22.g5496 Utricularia gibba HOM05D000188 ORTHO05D003976 3.2e-24 115.9 115 59.1
Os07g0495900 Oryza sativa ssp. japonica HOM05D000188 ORTHO05D003976 2.2e-20 103.2 49 89.8
HPP92_014919 Vanilla planifolia HOM05D000188 ORTHO05D003976 7.9e-15 84.7 37 94.6
BcaC03g16917 Brassica carinata HOM05D000188 ORTHO05D003976 3.3e-13 79.3 110 50.0
Haze_26602 Corylus avellana HOM05D000188 ORTHO05D003976 1.4e-11 73.9 44 63.6
Cfa026616 Carpinus fangiana HOM05D000188 ORTHO05D003976 5.9e-10 68.6 46 63.0
CiPaw.01G196500 Carya illinoinensis HOM05D000188 ORTHO05D003976 1.0e-06 57.8 30 83.3
Cre02.g092500 Chlamydomonas reinhardtii HOM05D000188 ORTHO05D003976 2.3e-06 56.6 44 56.8
C09p29210 Brassica napus HOM05D000188 ORTHO05D041154 3.0e-06 56.2 130 35.4
MCO10G305 Micromonas commoda HOM05D000188 ORTHO05D003976 6.7e-06 55.1 47 57.4


User provided reference genes

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