Gene: Solyc08g077420.3
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc08g077420.3
- Transcript Identifier Solyc08g077420.3.1
- Gene Type Coding gene
- Location SL4.0ch08 : 59385091-59397538 : positive
Gene Family Information
- ID HOM05D000188
- #Genes/#Species 2040/99
- Phylogenetic origin
- ID ORTHO05D003976
- #Genes/#Species 196/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Solyc08g077420.3.1
- uniprot A0A3Q7HRK9
- gene_id Solyc08g077420
Descriptions
- Description Regulator of nonsense transcripts 1-like protein (AHRD V3.3 *** A0A2G3AF80_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000184 | IBA IEA | GOA Database | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | |
| GO:0000184 | IEA | InterPro | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IBA IEA | GOA Database | RNA binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003724 | IBA IEA | GOA Database | RNA helicase activity | |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0008270 | IEA | GOA Database | zinc ion binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0016787 | IEA | InterPro | hydrolase activity | |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IBA IEA | GOA Database | cytoplasm | |
| GO:0005737 | IEA | InterPro | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR040812 | RNA helicase UPF1, 1B domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR041679 | DNA2/NAM7 helicase-like, C-terminal |
| IPR045055 | DNA2/NAM7-like helicase |
| IPR018999 | RNA helicase UPF1, Cys/His rich zinc-binding domain |
| IPR041677 | DNA2/NAM7 helicase, helicase domain |
| IPR006935 | Helicase/UvrB, N-terminal |
| Mapman id | Description |
|---|---|
| 17.3.2.3 | Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.effector protein (UPF1) |