Gene: PGSC0003DMG400034293

General Information

Structural Information

Species Solanum tuberosum
Gene Identifier PGSC0003DMG400034293
Transcript Identifier PGSC0003DMT400084705
Gene Type Coding gene
Location ST4.03ch00 : 43104453-43105004 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000188
#Genes/#Species 2040/99
Phylogenetic origin

ID ORTHO05D003976
#Genes/#Species 196/97
Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

pacid 37429706
id PGSC0003DMG400034293.v4.03
uniprot M1D7W2

Descriptions

Short descriptions
Ortholog descriptions

Description Low-level beta-amylase 1

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000184	IBA IEA	GOA Database	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000184	IEA	InterPro	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	GOA Database	zinc ion binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0004386	ISO	PLAZA Homology (enrichment)	helicase activity	HOM05D000188
GO:0003723	IBA IEA	GOA Database	RNA binding
GO:0003723	IEA	InterPro	RNA binding
GO:0003724	IBA IEA	GOA Database	RNA helicase activity
GO:0003724	IEA	InterPro	RNA helicase activity
GO:0005524	IEA	GOA Database	ATP binding
GO:0005524	IEA	InterPro	ATP binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005737	IBA IEA	GOA Database	cytoplasm
GO:0005737	IEA	InterPro	cytoplasm

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR018999	RNA helicase UPF1, Cys/His rich zinc-binding domain

Mapman id	Description
35.1	not assigned.annotated