Gene: Sopen08g026010
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen08g026010
- Transcript Identifier Sopen08g026010.1
- Gene Type Coding gene
- Location Spenn-ch08 : 65712845-65725703 : positive
Gene Family Information
- ID HOM05D000188
- #Genes/#Species 2040/99
- Phylogenetic origin
- ID ORTHO05D003976
- #Genes/#Species 196/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen08g026010.1
Descriptions
- Description Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. | LOW-LEVEL BETA-AMYLASE 1 (LBA1) | FUNCTIONS IN: in 6 functions | INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus | LOCATED IN: plasma membrane | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit , Helicase, superfamily 1/2, ATP-binding domain , RNA helicase UPF1, UPF2-interacting domain | BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000184 | IEA | InterPro | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0003724 | IEA | InterPro | RNA helicase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016787 | IEA | InterPro | hydrolase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | InterPro | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR040812 | RNA helicase UPF1, 1B domain |
| IPR041679 | DNA2/NAM7 helicase-like, C-terminal |
| IPR045055 | DNA2/NAM7-like helicase |
| IPR018999 | RNA helicase UPF1, Cys/His rich zinc-binding domain |
| IPR041677 | DNA2/NAM7 helicase, helicase domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR006935 | Helicase/UvrB, N-terminal |
| Mapman id | Description |
|---|---|
| 17.3.2.3 | Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.effector protein (UPF1) |