Gene: Sopen08g003060

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g003060
  • Transcript Identifier Sopen08g003060.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 1856243-1867552 : positive

Gene Family Information

  • ID HOM05D000188
  • #Genes/#Species 2040/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g003060.1

Descriptions

  • Description Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes. | LOW-LEVEL BETA-AMYLASE 1 (LBA1) | FUNCTIONS IN: in 6 functions | INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus | LOCATED IN: plasma membrane | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit , Helicase, superfamily 1/2, ATP-binding domain , RNA helicase UPF1, UPF2-interacting domain | BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016246
ISO
PLAZA Integrative OrthologyRNA interference AT5G47010
GO:0048571
ISO
PLAZA Integrative Orthologylong-day photoperiodism AT5G47010
GO:0009744
ISO
PLAZA Integrative Orthologyresponse to sucrose AT5G47010
GO:0006412
ISO
PLAZA Integrative Orthologytranslation AT5G47010
GO:0009867
ISO
PLAZA Integrative Orthologyjasmonic acid mediated signaling pathway AT5G47010
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT5G47010
GO:0009863
ISO
PLAZA Integrative Orthologysalicylic acid mediated signaling pathway AT5G47010
GO:0000184
IEA
InterPronuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT5G47010
GO:0010182
ISO
PLAZA Integrative Orthologysugar mediated signaling pathway AT5G47010
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT5G47010

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G47010
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G47010
GO:0016787
IEA
InterProhydrolase activity
GO:0003677
IEA
InterProDNA binding
GO:0004386
IEA
InterProhelicase activity
GO:0008270
IEA
InterProzinc ion binding
GO:0005524
IEA
InterProATP binding
GO:0003724
IEA
InterProRNA helicase activity
GO:0003723
IEA
InterProRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G47010
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G47010
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G47010
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT5G47010
GO:0005737
IEA
InterProcytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018999 RNA helicase UPF1, Cys/His rich zinc-binding domain
IPR040812 RNA helicase UPF1, 1B domain
IPR041677 DNA2/NAM7 helicase, helicase domain
IPR041679 DNA2/NAM7 helicase-like, C-terminal
IPR006935 Helicase/UvrB, N-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR045055 DNA2/NAM7-like helicase
Mapman id Description
17.3.2.3 Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.effector protein (UPF1)