Gene: AT5G47010

General Information

Computational description LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink).

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0000184	IEA	GOA Database	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000184	IMP IBA	Gene Ontology	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1 2
GO:0000184	IEA	InterPro	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0006952	IEA	GOA Database	defense response
GO:0009867	IMP	Gene Ontology	jasmonic acid mediated signaling pathway	3
GO:0010182	IMP	Gene Ontology	sugar mediated signaling pathway	4
GO:0016246	IGI	Gene Ontology	RNA interference	5
GO:0042742	IMP	Gene Ontology	defense response to bacterium	6
GO:0009611	IMP	Gene Ontology	response to wounding	3
GO:0009863	IMP	Gene Ontology	salicylic acid mediated signaling pathway	3
GO:0048571	IMP	Gene Ontology	long-day photoperiodism	3
GO:0006412	IMP	Gene Ontology	translation	7
GO:0008380	IMP	Gene Ontology	RNA splicing	7
GO:0009744	IGI	Gene Ontology	response to sucrose	8

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003729	IDA	GOA Database	mRNA binding
GO:0003729	HDA	Gene Ontology	mRNA binding	9
GO:0046872	IEA	GOA Database	metal ion binding
GO:0003723	IEA	GOA Database	RNA binding
GO:0003723	IBA	Gene Ontology	RNA binding	2
GO:0003723	IEA	InterPro	RNA binding
GO:0016787	IEA	GOA Database	hydrolase activity
GO:0016787	IEA	InterPro	hydrolase activity
GO:0000166	IEA	GOA Database	nucleotide binding
GO:0004386	IEA	GOA Database	helicase activity
GO:0004386	IEA	InterPro	helicase activity
GO:0003724	IEA	GOA Database	RNA helicase activity
GO:0003724	IBA	Gene Ontology	RNA helicase activity	2
GO:0003724	IEA	InterPro	RNA helicase activity
GO:0005524	IEA	GOA Database	ATP binding
GO:0005524	IEA	InterPro	ATP binding
GO:0008270	IEA	Gene Ontology	zinc ion binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0003677	IEA	Gene Ontology	DNA binding
GO:0003677	IEA	InterPro	DNA binding
GO:0005515	IPI	Gene Ontology	protein binding	10

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005737	IEA	GOA Database	cytoplasm
GO:0005737	IDA ISM, IBA	Gene Ontology	cytoplasm	2 11
GO:0005737	IEA	InterPro	cytoplasm
GO:0000932	IEA	GOA Database	P-body
GO:0000932	IDA	Gene Ontology	P-body	12
GO:0005886	IDA	GOA Database	plasma membrane
GO:0009506	IDA	GOA Database	plasmodesma
GO:0009506	HDA	Gene Ontology	plasmodesma	13
GO:0005829	IDA RCA	Gene Ontology	cytosol	12 14

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR041679	DNA2/NAM7 helicase-like, C-terminal
IPR041677	DNA2/NAM7 helicase, helicase domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR040812	RNA helicase UPF1, 1B domain
IPR018999	RNA helicase UPF1, Cys/His rich zinc-binding domain
IPR006935	Helicase/UvrB, N-terminal
IPR045055	DNA2/NAM7-like helicase

Mapman id	Description
17.3.2.3	Protein biosynthesis.mRNA quality control.NMD Nonsense-Mediated Decay.effector protein (UPF1)