Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 5.9e-150 534.3 287 100.0
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 2.1e-147 525.8 287 98.6
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 7.5e-145 517.3 287 97.6
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 7.8e-134 480.7 287 92.0
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 1.9e-132 476.1 305 86.9
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 5.6e-124 448.0 296 84.8
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 1.9e-111 406.4 289 78.2
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.0e-109 399.1 289 77.5
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 5.1e-109 398.3 289 77.5
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 1.6e-107 393.3 288 75.0
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 5.2e-106 388.3 288 74.7
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 6.8e-106 387.9 288 75.0
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 1.2e-105 387.1 266 79.7
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 1.5e-105 386.7 288 75.0
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.6e-105 386.0 288 73.6
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.6e-105 386.0 288 73.6
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 4.4e-105 385.2 288 74.0
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 9.9e-105 384.0 288 73.3
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 1.3e-104 383.6 288 72.9
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.3e-104 383.6 286 73.4
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 2.2e-104 382.9 289 75.8
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 1.9e-103 379.8 308 70.8
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 3.2e-103 379.0 288 74.0
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 4.2e-103 378.6 292 74.3
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 5.4e-103 378.3 288 72.6
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 5.4e-103 378.3 302 70.9
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 9.2e-103 377.5 286 73.4
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 2.1e-102 376.3 288 72.2
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 4.6e-102 375.2 288 73.3
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 4.6e-102 375.2 288 73.6
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 1.3e-101 373.6 288 72.6
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.3e-101 373.6 290 73.1
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.3e-101 373.6 290 72.8
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 3.0e-101 372.5 289 73.4
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 3.9e-101 372.1 288 71.9
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 6.6e-101 371.3 286 72.0
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 1.9e-100 369.8 267 75.3
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.5e-100 369.4 290 72.1
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 7.3e-100 367.9 288 71.9
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 1.2e-99 367.1 288 71.9
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 3.6e-99 365.5 267 73.4
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 6.2e-99 364.8 286 71.0
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 1.1e-98 364.0 289 72.3
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 1.1e-98 364.0 286 71.0
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 2.4e-98 362.8 286 70.3
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 3.1e-98 362.5 288 69.8
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 5.3e-98 361.7 288 69.8
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 9.0e-98 360.9 287 71.1
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 2.6e-97 359.4 288 69.8
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 9.9e-97 357.5 288 71.2
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 1.7e-96 356.7 242 77.7
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 2.2e-96 356.3 287 70.0
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 2.2e-96 356.3 288 71.5
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 2.9e-96 355.9 246 78.0
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 3.8e-96 355.5 288 70.8
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 8.4e-96 354.4 288 70.5
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 8.4e-96 354.4 287 70.0
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 2.4e-95 352.8 242 77.3
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 2.4e-95 352.8 242 77.3
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 2.4e-95 352.8 293 71.0
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.2e-95 352.4 287 70.0
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 4.2e-95 352.1 243 77.4
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 4.2e-95 352.1 255 73.7
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 4.2e-95 352.1 245 76.3
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 4.2e-95 352.1 286 71.7
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 4.2e-95 352.1 289 70.2
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.2e-94 350.5 243 77.4
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.2e-94 350.5 290 70.7
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 1.6e-94 350.1 242 77.3
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 1.6e-94 350.1 288 69.1
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 2.1e-94 349.7 288 68.1
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 2.7e-94 349.4 281 71.5
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 6.0e-94 348.2 271 72.7
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.3e-93 347.1 288 69.1
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 1.3e-93 347.1 287 69.0
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 1.7e-93 346.7 272 71.7
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 3.0e-93 345.9 270 70.4
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 5.1e-93 345.1 242 76.4
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 6.6e-93 344.7 272 69.9
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 6.6e-93 344.7 277 70.8
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 1.5e-92 343.6 277 70.4
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 2.5e-92 342.8 289 70.9
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 5.6e-92 341.7 288 68.1
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 7.3e-92 341.3 242 75.6
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 7.3e-92 341.3 288 69.1
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 3.6e-91 339.0 316 65.5
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 6.2e-91 338.2 252 73.0
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 6.2e-91 338.2 252 73.0
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 1.1e-90 337.4 242 74.8
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 1.8e-90 336.7 252 72.6
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 1.8e-90 336.7 252 72.6
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 2.4e-90 336.3 242 74.4
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 2.4e-90 336.3 289 67.1
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 4.0e-90 335.5 288 67.0
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 6.9e-90 334.7 242 74.4
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 9.0e-90 334.3 287 67.9
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 2.6e-89 332.8 243 72.4
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 3.4e-89 332.4 286 65.7
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 5.8e-89 331.6 288 64.6
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 2.4e-87 326.2 288 65.3
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 4.2e-87 325.5 286 66.4
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 1.3e-85 320.5 286 65.4
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 5.1e-85 318.5 287 62.4
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 6.7e-85 318.2 260 70.0
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 7.4e-84 314.7 260 70.4
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 2.1e-83 313.2 229 80.3
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.8e-82 310.1 262 68.7
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.5e-78 295.8 288 62.8
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 4.6e-78 295.4 273 61.5
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 2.3e-77 293.1 246 68.7
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.3e-75 287.3 211 76.3
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 4.9e-72 275.4 285 58.9
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 2.3e-69 266.5 257 61.5
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 2.3e-69 266.5 288 56.2
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 2.8e-67 259.6 153 84.3
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 4.8e-67 258.8 293 53.9
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.1e-66 257.7 153 83.7
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.8e-58 230.3 222 65.3
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.4e-55 220.7 156 73.1
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 7.2e-55 218.4 200 58.5
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.6e-54 217.2 258 48.8
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 1.8e-53 213.8 125 85.6
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.2e-49 201.1 153 69.9
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 7.2e-47 191.8 153 64.7
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.0e-45 186.4 156 66.0
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 6.3e-43 178.7 156 63.5
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.6e-41 174.1 156 61.5
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.3e-40 171.0 189 56.6
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 3.8e-40 169.5 289 44.3
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 2.1e-38 163.7 241 41.9
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.1e-34 151.4 105 71.4
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.6e-30 136.3 67 95.5
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 9.5e-23 111.7 142 56.3
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.0e-21 108.2 136 56.6
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 7.5e-20 102.1 73 64.4
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 2.1e-14 84.0 135 49.6
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 3.6e-14 83.2 144 43.8
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 2.6e-12 77.0 42 83.3
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.9e-10 70.9 173 34.1
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 5.0e-08 62.8 73 57.5
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 2.1e-06 57.4 46 67.4


User provided reference genes

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