Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 1.7e-64 249.2 125 100.0
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 2.4e-63 245.4 125 97.6
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 1.3e-61 239.6 125 96.0
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 2.9e-61 238.4 123 95.9
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 3.8e-61 238.0 125 94.4
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 5.0e-61 237.7 125 94.4
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 6.5e-61 237.3 125 94.4
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 6.5e-61 237.3 123 95.1
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 6.5e-61 237.3 125 94.4
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 8.5e-61 236.9 125 94.4
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 8.5e-61 236.9 125 94.4
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 8.5e-61 236.9 125 94.4
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 8.5e-61 236.9 123 95.1
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 8.5e-61 236.9 125 94.4
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.1e-60 236.5 125 94.4
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 1.1e-60 236.5 125 94.4
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 1.1e-60 236.5 125 93.6
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 1.9e-60 235.7 125 94.4
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 1.9e-60 235.7 125 93.6
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 2.5e-60 235.3 125 92.8
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 2.5e-60 235.3 125 93.6
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 93.6
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 93.6
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 92.8
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 92.8
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 93.6
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 93.6
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 93.6
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 7.2e-60 233.8 125 92.8
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 7.2e-60 233.8 125 92.8
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 7.2e-60 233.8 125 92.8
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 7.2e-60 233.8 125 92.8
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 9.4e-60 233.4 125 92.8
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 9.4e-60 233.4 125 92.8
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 1.2e-59 233.0 125 92.8
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 1.6e-59 232.6 123 92.7
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 1.6e-59 232.6 124 91.9
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 92.0
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 91.2
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 2.1e-59 232.3 125 91.2
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 4.7e-59 231.1 125 92.0
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 4.7e-59 231.1 125 92.0
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 4.7e-59 231.1 125 91.2
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 4.7e-59 231.1 126 92.9
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 6.1e-59 230.7 125 91.2
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 8.0e-59 230.3 126 92.1
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 8.0e-59 230.3 126 92.1
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 8.0e-59 230.3 125 92.0
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 1.4e-58 229.6 123 90.2
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 1.4e-58 229.6 125 91.2
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 1.4e-58 229.6 125 91.2
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 1.8e-58 229.2 123 90.2
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 2.3e-58 228.8 123 90.2
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 2.3e-58 228.8 128 89.8
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 2.3e-58 228.8 125 91.2
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 2.3e-58 228.8 125 91.2
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 3.0e-58 228.4 123 91.1
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 3.0e-58 228.4 125 91.2
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 3.9e-58 228.0 123 90.2
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 5.2e-58 227.6 124 90.3
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 5.2e-58 227.6 127 90.6
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 6.7e-58 227.3 123 91.1
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 6.7e-58 227.3 123 91.1
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 6.7e-58 227.3 125 90.4
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 89.4
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 2.0e-57 225.7 123 89.4
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 2.0e-57 225.7 125 90.4
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 2.0e-57 225.7 125 90.4
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 2.0e-57 225.7 125 90.4
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 2.0e-57 225.7 128 89.1
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 2.6e-57 225.3 125 91.2
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 88.8
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 88.8
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 88.8
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 88.8
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 90.4
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 4.4e-57 224.6 125 90.4
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 5.7e-57 224.2 125 90.4
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 7.4e-57 223.8 125 88.0
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 7.4e-57 223.8 126 89.7
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 7.4e-57 223.8 118 92.4
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 9.7e-57 223.4 125 87.2
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 9.7e-57 223.4 125 87.2
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 9.7e-57 223.4 121 90.1
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 9.7e-57 223.4 123 87.0
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 88.0
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 89.6
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 1.3e-56 223.0 121 90.1
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 88.0
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 1.7e-56 222.6 125 88.0
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.2e-56 222.2 125 88.8
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 2.2e-56 222.2 125 88.8
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 2.2e-56 222.2 129 86.0
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 2.8e-56 221.9 125 87.2
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 3.7e-56 221.5 128 86.7
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 3.7e-56 221.5 128 86.7
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 4.8e-56 221.1 116 94.8
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 4.8e-56 221.1 117 91.5
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 1.1e-55 219.9 125 88.0
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.4e-55 219.5 125 88.8
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 1.4e-55 219.5 116 93.1
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 1.8e-55 219.2 122 86.9
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 1.8e-55 219.2 124 85.5
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 2.4e-55 218.8 116 93.1
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 3.1e-55 218.4 128 87.5
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 2.0e-54 215.7 119 87.4
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 3.5e-54 214.9 122 84.4
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 4.5e-54 214.5 125 87.2
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 4.5e-54 214.5 122 84.4
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 4.5e-54 214.5 119 85.7
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 4.5e-54 214.5 122 84.4
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 5.0e-53 211.1 125 83.2
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 1.1e-52 209.9 118 84.7
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 1.2e-51 206.5 115 87.0
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 9.7e-49 196.8 125 75.2
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 8.2e-48 193.7 139 72.7
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.0e-46 189.1 116 78.4
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 2.9e-45 185.3 119 73.9
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 6.5e-45 184.1 105 87.6
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 1.1e-44 183.3 115 76.5
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 7.5e-41 170.6 93 87.1
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 2.4e-39 165.6 85 92.9
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 1.3e-37 159.8 91 87.9
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 2.2e-32 142.5 109 59.6
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 9.5e-28 127.1 113 48.7
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 3.2e-23 112.1 70 72.9
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 6.2e-19 97.8 95 53.7
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 5.4e-15 84.7 42 92.9
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 1.6e-14 83.2 77 57.1
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 3.2e-07 58.9 81 37.0
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 3.2e-07 58.9 78 43.6
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 5.4e-07 58.2 31 83.9
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 7.1e-07 57.8 84 39.3
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 9.2e-07 57.4 84 35.7
Lalb_Chr01g0003091 Lupinus albus HOM05D002300 ORTHO05D002340 9.2e-07 57.4 80 36.2
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 1.6e-06 56.6 83 34.9
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 1.6e-06 56.6 83 34.9
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 2.1e-06 56.2 72 40.3
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 2.1e-06 56.2 83 34.9
A02p24730 Brassica napus HOM05D001413 ORTHO05D001385 2.7e-06 55.8 74 36.5
MBI14_g02603_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 2.7e-06 55.8 114 33.3
Medtr4g068120 Medicago truncatula HOM05D002300 ORTHO05D002340 2.7e-06 55.8 80 38.8
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 2.7e-06 55.8 64 45.3
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 3.5e-06 55.5 75 36.0
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 3.5e-06 55.5 120 34.2
AagrBONN_evm.TU.Sc2ySwM_344.3377 Anthoceros agrestis HOM05D000142 ORTHO05D001253 4.6e-06 55.1 83 34.9
arahy.Tifrunner.gnm1.ann1.L2JJZ6 Arachis hypogaea HOM05D002300 ORTHO05D002340 4.6e-06 55.1 90 34.4
arahy.Tifrunner.gnm1.ann1.RX7M1F Arachis hypogaea HOM05D002300 ORTHO05D002340 4.6e-06 55.1 90 34.4
Haze_04133 Corylus avellana HOM05D001413 ORTHO05D001385 4.6e-06 55.1 78 35.9
Glyma.19G188700 Glycine max HOM05D000428 ORTHO05D000582 4.6e-06 55.1 85 37.6
Eucgr.B04011 Eucalyptus grandis HOM05D002411 ORTHO05D002564 6.0e-06 54.7 82 39.0
Gohir.A03G000053 Gossypium hirsutum HOM05D000142 ORTHO05D003173 6.0e-06 54.7 84 34.5
Ah.13g073790 Amaranthus hybridus HOM05D002300 ORTHO05D002340 7.8e-06 54.3 101 32.7
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 7.8e-06 54.3 83 38.6
Haze_04929 Corylus avellana HOM05D001413 ORTHO05D001385 7.8e-06 54.3 78 39.7
Haze_04930 Corylus avellana HOM05D001413 ORTHO05D001385 7.8e-06 54.3 78 39.7
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 7.8e-06 54.3 99 30.3
MBI16_g24360_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 7.8e-06 54.3 109 30.3
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 7.8e-06 54.3 96 33.3
SMO276G0012 Selaginella moellendorffii HOM05D003264 ORTHO05D003276 7.8e-06 54.3 92 30.4


User provided reference genes

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