Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os06g0183800 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D003467 5.4e-251 870.5 442 100.0
THA.LOC104803635 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 1.8e-68 264.2 438 38.6
A09p55830 Brassica napus HOM05D000104 ORTHO05D003467 1.3e-66 258.1 431 38.1
THA.LOC104803854 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 2.1e-66 257.3 471 36.1
Thhalv10000014m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 3.7e-66 256.5 439 37.4
BcaB08g35151 Brassica carinata HOM05D000104 ORTHO05D003467 6.2e-66 255.8 434 36.9
BraA09t40986Z Brassica rapa HOM05D000104 ORTHO05D003467 8.2e-66 255.4 430 37.7
Manes.03G010400 Manihot esculenta HOM05D000104 ORTHO05D003467 8.2e-66 255.4 463 36.1
HanXRQChr11g0353801 Helianthus annuus HOM05D000104 ORTHO05D003467 1.4e-65 254.6 394 38.8
BcaC07g40886 Brassica carinata HOM05D000104 ORTHO05D003467 5.3e-65 252.7 434 37.3
BolC8t51453H Brassica oleracea HOM05D000104 ORTHO05D003467 5.3e-65 252.7 434 37.3
ECA248G2891 Erigeron canadensis HOM05D000104 ORTHO05D003467 6.9e-65 252.3 397 39.3
Carub.0004s0475 Capsella rubella HOM05D000104 ORTHO05D003467 9.0e-65 251.9 438 37.7
GSVIVG01035901001 Vitis vinifera HOM05D000104 ORTHO05D003467 1.5e-64 251.1 431 37.4
Ciclev10010331m.g Citrus clementina HOM05D000104 ORTHO05D003467 2.6e-64 250.4 482 36.5
Aa31sc100G10 Aethionema arabicum HOM05D000104 ORTHO05D003467 4.5e-64 249.6 469 36.7
C08p38830 Brassica napus HOM05D000104 ORTHO05D003467 1.0e-63 248.4 389 39.3
Cpa.g.sc127.15 Carica papaya HOM05D000104 ORTHO05D003467 2.9e-63 246.9 463 36.1
Eucgr.G00556 Eucalyptus grandis HOM05D000104 ORTHO05D003467 5.0e-63 246.1 483 35.4
Sp4g04150 Schrenkiella parvula HOM05D000104 ORTHO05D003467 5.0e-63 246.1 475 36.0
PGR044G1954 Punica granatum HOM05D000104 ORTHO05D003467 8.4e-63 245.4 457 35.7
Sc09g0010480 Simmondsia chinensis HOM05D000104 ORTHO05D003467 1.1e-62 245.0 448 35.9
Hund03464 Selenicereus undatus HOM05D000104 ORTHO05D003467 1.9e-62 244.2 445 34.4
CARHR116490 Cardamine hirsuta HOM05D000104 ORTHO05D003467 2.5e-62 243.8 439 36.2
Nn2g12306 Nelumbo nucifera HOM05D000104 ORTHO05D003467 5.5e-62 242.7 463 35.6
Gohir.A13G179800 Gossypium hirsutum HOM05D000104 ORTHO05D003467 9.3e-62 241.9 494 35.2
AT2G25170 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 1.6e-61 241.1 480 34.8
Lsat_1_v5_gn_1_42900 Lactuca sativa HOM05D000104 ORTHO05D003467 2.7e-61 240.4 438 36.5
TWI63G1656 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 2.7e-61 240.4 488 33.0
AL4G16380 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 3.5e-61 240.0 480 35.8
Lalb_Chr08g0244361 Lupinus albus HOM05D000104 ORTHO05D003467 3.5e-61 240.0 433 34.2
HanXRQChr01g0030671 Helianthus annuus HOM05D000104 ORTHO05D003467 4.6e-61 239.6 463 34.8
PSO384G0886 Papaver somniferum HOM05D000104 ORTHO05D003467 6.1e-61 239.2 463 35.2
Medtr3g106210 Medicago truncatula HOM05D000104 ORTHO05D003467 7.9e-61 238.8 462 34.8
MELO3C016973.2 Cucumis melo HOM05D000104 ORTHO05D003467 1.0e-60 238.4 457 34.4
CSS0032982 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 1.3e-60 238.0 477 35.2
Ca_15766_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 2.3e-60 237.3 455 36.0
Glyma.04G062400 Glycine max HOM05D000104 ORTHO05D003467 2.3e-60 237.3 484 33.3
TPR.G3131 Trifolium pratense HOM05D000104 ORTHO05D003467 2.3e-60 237.3 490 33.5
Psat5g031880 Pisum sativum HOM05D000104 ORTHO05D003467 3.9e-60 236.5 489 35.0
Manes.16G127700 Manihot esculenta HOM05D000104 ORTHO05D003467 5.1e-60 236.1 454 37.0
Sed0013682 Sechium edule HOM05D000104 ORTHO05D003467 5.1e-60 236.1 481 35.3
TAR625G0155 Trochodendron aralioides HOM05D000104 ORTHO05D003467 5.1e-60 236.1 488 34.0
VMungo1309G2115 Vigna mungo HOM05D000104 ORTHO05D003467 5.1e-60 236.1 420 35.2
Lj1g0020904 Lotus japonicus HOM05D000104 ORTHO05D003467 6.7e-60 235.7 485 34.2
Rhsim07G0163100 Rhododendron simsii HOM05D000104 ORTHO05D003467 6.7e-60 235.7 497 34.4
Sabra06G0204500 Salix brachista HOM05D000104 ORTHO05D003467 6.7e-60 235.7 452 35.0
Glyma.06G063400 Glycine max HOM05D000104 ORTHO05D003467 8.7e-60 235.3 463 33.9
Gorai.010G244100 Gossypium raimondii HOM05D000104 ORTHO05D003467 8.7e-60 235.3 472 36.0
Lj7A730T43 Lonicera japonica HOM05D000104 ORTHO05D003467 1.5e-59 234.6 415 36.6
ClCG05G016460 Citrullus lanatus HOM05D000104 ORTHO05D003467 2.5e-59 233.8 488 34.2
Sopen06g024260 Solanum pennellii HOM05D000104 ORTHO05D003467 2.5e-59 233.8 468 35.5
CiPaw.08G007100 Carya illinoinensis HOM05D000104 ORTHO05D003467 4.3e-59 233.0 460 33.7
Gohir.A07G031300 Gossypium hirsutum HOM05D000104 ORTHO05D003467 4.3e-59 233.0 501 33.9
Gorai.001G036900 Gossypium raimondii HOM05D000104 ORTHO05D003467 4.3e-59 233.0 459 34.4
Gohir.D07G035100 Gossypium hirsutum HOM05D000104 ORTHO05D003467 5.7e-59 232.6 472 34.3
Peaxi162Scf00430g00415 Petunia axillaris HOM05D000104 ORTHO05D003467 5.7e-59 232.6 439 36.0
PSO339G0671 Papaver somniferum HOM05D000104 ORTHO05D003467 7.4e-59 232.3 462 33.8
QL02p019684 Quercus lobata HOM05D000104 ORTHO05D003467 7.4e-59 232.3 492 33.3
CSS0003293 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 9.7e-59 231.9 437 35.7
Thecc.09G017400 Theobroma cacao HOM05D000104 ORTHO05D003467 9.7e-59 231.9 486 32.9
Dinv16472 Davidia involucrata HOM05D000104 ORTHO05D003467 1.6e-58 231.1 492 33.9
Lalb_Chr23g0268291 Lupinus albus HOM05D000104 ORTHO05D003467 2.2e-58 230.7 465 33.3
Potri.006G262200 Populus trichocarpa HOM05D000104 ORTHO05D003467 2.2e-58 230.7 494 33.4
Nitab4.5_0002503g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 2.8e-58 230.3 481 33.9
Sed0022321 Sechium edule HOM05D000104 ORTHO05D003467 8.2e-58 228.8 486 32.7
Duzib150G0247 Durio zibethinus HOM05D000104 ORTHO05D003467 1.4e-57 228.0 488 33.8
Phvul.009G088700 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 1.4e-57 228.0 466 33.7
TWI32G0850 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 1.4e-57 228.0 475 33.7
Potri.018G021100 Populus trichocarpa HOM05D000104 ORTHO05D003467 4.1e-57 226.5 493 32.9
Cc08_g00060 Coffea canephora HOM05D000104 ORTHO05D003467 6.9e-57 225.7 467 34.5
Haze_21436 Corylus avellana HOM05D000104 ORTHO05D003467 9.0e-57 225.3 463 33.3
FvH4_2g40920 Fragaria vesca HOM05D005818 ORTHO05D003467 9.0e-57 225.3 471 33.3
Hma1.2p1_0392F.1_g143010 Hydrangea macrophylla HOM05D000104 ORTHO05D003467 1.2e-56 224.9 477 34.0
arahy.Tifrunner.gnm1.ann1.QU94QB Arachis hypogaea HOM05D000104 ORTHO05D003467 1.5e-56 224.6 493 31.8
CsaV3_4G036700 Cucumis sativus L. HOM05D000104 ORTHO05D003467 2.6e-56 223.8 492 33.3
Aqoxy2G02630 Aquilegia oxysepala HOM05D000104 ORTHO05D003467 3.4e-56 223.4 417 34.5
Lalb_Chr24g0402041 Lupinus albus HOM05D000104 ORTHO05D003467 3.4e-56 223.4 439 33.3
FAN20G2022 Fragaria x ananassa HOM05D000104 ORTHO05D003467 4.5e-56 223.0 477 32.7
Prupe.1G391600 Prunus persica HOM05D000104 ORTHO05D003467 4.5e-56 223.0 456 33.1
Oeu012636.1 Olea europaea HOM05D000104 ORTHO05D003467 7.7e-56 222.2 421 34.9
CAN.G199.65 Capsicum annuum HOM05D000104 ORTHO05D003467 1.7e-55 221.1 440 35.5
Sabra18G0023400 Salix brachista HOM05D000104 ORTHO05D003467 1.7e-55 221.1 513 31.8
Solyc06g065730.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 1.7e-55 221.1 460 35.2
FAN27G0005 Fragaria x ananassa HOM05D000104 ORTHO05D003467 5.0e-55 219.5 471 32.9
SEGI_33990 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 6.5e-55 219.2 488 33.0
Rhsim02G0208200 Rhododendron simsii HOM05D000104 ORTHO05D003467 8.5e-55 218.8 435 33.6
EL10Ac2g04134 Beta vulgaris HOM05D000104 ORTHO05D003467 1.9e-54 217.6 456 33.3
Atru.chr7.2524 Acer truncatum HOM05D000104 ORTHO05D003467 5.5e-54 216.1 300 41.7
Hund19597 Selenicereus undatus HOM05D000104 ORTHO05D003467 5.5e-54 216.1 429 35.4
Solyc08g029130.3 Solanum lycopersicum HOM05D000104 ORTHO05D003467 5.5e-54 216.1 493 33.9
Sopen08g010020 Solanum pennellii HOM05D000104 ORTHO05D003467 1.6e-53 214.5 493 32.9
FAN15G1888 Fragaria x ananassa HOM05D000104 ORTHO05D003467 2.1e-53 214.2 478 32.4
Nitab4.5_0003811g0020 Nicotiana tabacum HOM05D000104 ORTHO05D003467 7.9e-53 212.2 519 31.6
AUR62012463 Chenopodium quinoa HOM05D000104 ORTHO05D003467 1.8e-52 211.1 448 33.0
Psat6g027200 Pisum sativum HOM05D000104 ORTHO05D003467 3.0e-52 210.3 458 32.1
Peaxi162Scf00632g00012 Petunia axillaris HOM05D000104 ORTHO05D003467 3.9e-52 209.9 480 32.5
Ah.10g035570 Amaranthus hybridus HOM05D000104 ORTHO05D003467 1.5e-51 208.0 443 30.9
Glyma.17G217300 Glycine max HOM05D000104 ORTHO05D003467 1.5e-51 208.0 467 31.5
MSTRG.11592 Avicennia marina HOM05D000104 ORTHO05D003467 2.0e-51 207.6 510 30.8
vmacro05141 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 2.0e-51 207.6 554 30.3
AUR62031587 Chenopodium quinoa HOM05D000104 ORTHO05D003467 2.5e-51 207.2 477 31.2
ATR1153G016 Amborella trichopoda HOM05D000104 ORTHO05D003467 3.3e-51 206.8 446 32.7
MD15G1037700 Malus domestica HOM05D000104 ORTHO05D003467 1.3e-50 204.9 477 33.1
RcHm_v2.0_Chr3g0455421 Rosa chinensis HOM05D000104 ORTHO05D003467 2.2e-50 204.1 405 33.6
Ah.16g104930 Amaranthus hybridus HOM05D000104 ORTHO05D003467 2.8e-50 203.8 291 40.9
MD08G1058800 Malus domestica HOM05D000104 ORTHO05D003467 2.8e-50 203.8 493 31.6
Migut.A00006 Erythranthe guttata HOM05D000104 ORTHO05D003467 4.8e-50 203.0 510 31.0
RcHm_v2.0_Chr6g0299661 Rosa chinensis HOM05D000104 ORTHO05D003467 4.8e-50 203.0 475 32.0
Lalb_Chr22g0361401 Lupinus albus HOM05D000104 ORTHO05D003467 8.2e-50 202.2 341 36.1
THA.LOC104804837 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 1.4e-49 201.4 269 42.0
CDE06G2391 Ceratophyllum demersum HOM05D000104 ORTHO05D003467 9.1e-49 198.7 476 31.9
Nitab4.5_0002973g0030 Nicotiana tabacum HOM05D000104 ORTHO05D003467 1.2e-48 198.4 472 31.8
DCAR_007677 Daucus carota HOM05D000104 ORTHO05D003467 4.5e-48 196.4 516 31.8
SMO200G0085 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 4.5e-48 196.4 399 33.8
VMungo0647G2573 Vigna mungo HOM05D000104 ORTHO05D003467 8.5e-47 192.2 402 33.1
DCAR_003002 Daucus carota HOM05D000104 ORTHO05D003467 1.4e-46 191.4 313 38.3
Medtr1g013190 Medicago truncatula HOM05D000104 ORTHO05D003467 1.4e-46 191.4 417 30.9
SMO228G0183 Selaginella moellendorffii HOM05D000104 ORTHO05D003467 2.7e-45 187.2 382 31.9
Sp7g29720 Schrenkiella parvula HOM05D000104 ORTHO05D003467 3.6e-45 186.8 375 31.5
SGA_v2.0_scaffold20G09081 Striga asiatica HOM05D000104 ORTHO05D003467 4.7e-45 186.4 475 32.0
Oeu056768.1 Olea europaea HOM05D000104 ORTHO05D003467 2.3e-44 184.1 384 33.3
Phvul.001G046100 Phaseolus vulgaris HOM05D000104 ORTHO05D003467 2.3e-44 184.1 419 31.3
HPP92_004615 Vanilla planifolia HOM05D000104 ORTHO05D003467 3.9e-44 183.3 265 40.4
Thhalv10027006m.g Eutrema salsugineum HOM05D000104 ORTHO05D003467 8.2e-42 175.6 296 36.8
Mapoly0010s0012 Marchantia polymorpha HOM05D000104 ORTHO05D003467 2.4e-41 174.1 493 29.8
Pp3c21_10800 Physcomitrium patens HOM05D000104 ORTHO05D003467 7.7e-40 169.1 275 36.7
TPR.G38889 Trifolium pratense HOM05D000104 ORTHO05D003467 1.0e-39 168.7 263 40.7
Actinidia22307 Actinidia chinensis HOM05D000104 ORTHO05D003467 1.5e-38 164.9 180 47.2
Pp3c18_19040 Physcomitrium patens HOM05D000104 ORTHO05D003467 7.2e-38 162.5 287 34.5
Pp3c18_19045 Physcomitrium patens HOM05D000104 ORTHO05D003467 7.2e-38 162.5 287 34.5
THA.LOC104804839 Tarenaya hassleriana HOM05D000104 ORTHO05D003467 8.0e-37 159.1 209 41.6
vmacro05139 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 3.0e-36 157.1 320 32.8
C01p06980 Brassica napus HOM05D000104 ORTHO05D003467 5.3e-33 146.4 256 34.8
BcaC09g51983 Brassica carinata HOM05D000104 ORTHO05D003467 1.6e-32 144.8 194 39.7
BraA01t00598Z Brassica rapa HOM05D000104 ORTHO05D003467 1.6e-32 144.8 265 34.3
A01p06320 Brassica napus HOM05D000104 ORTHO05D003467 3.5e-32 143.7 256 34.8
AT4G31900 Arabidopsis thaliana HOM05D000104 ORTHO05D003467 2.2e-31 141.0 194 39.2
BolC1t00694H Brassica oleracea HOM05D000104 ORTHO05D003467 2.2e-31 141.0 256 34.4
A03p61110 Brassica napus HOM05D000104 ORTHO05D003467 5.0e-31 139.8 255 32.9
TPR.G26726 Trifolium pratense HOM05D000104 ORTHO05D003467 1.9e-30 137.9 245 35.5
C07p58980 Brassica napus HOM05D000104 ORTHO05D003467 2.5e-30 137.5 235 33.2
COL.COLO4_18936 Corchorus olitorius HOM05D000104 ORTHO05D003467 2.5e-30 137.5 389 31.6
TWI32G1204 Tripterygium wilfordii HOM05D000104 ORTHO05D003467 4.2e-30 136.7 236 35.6
Gohir.D13G187900 Gossypium hirsutum HOM05D000104 ORTHO05D003467 5.5e-30 136.3 168 45.2
Oeu000758.1 Olea europaea HOM05D000104 ORTHO05D003467 9.4e-30 135.6 170 44.1
AL7G20000 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 2.7e-29 134.0 390 28.7
Carub.0007s0864 Capsella rubella HOM05D000104 ORTHO05D003467 3.0e-28 130.6 259 32.8
AL7G19990 Arabidopsis lyrata HOM05D000104 ORTHO05D003467 1.2e-27 128.6 316 30.7
A01p06340 Brassica napus HOM05D000104 ORTHO05D003467 1.2e-27 128.6 239 33.1
BcaC09g51981 Brassica carinata HOM05D000104 ORTHO05D003467 2.0e-27 127.9 239 32.2
C01p07000 Brassica napus HOM05D000104 ORTHO05D003467 2.6e-27 127.5 239 32.2
BraA01t00599Z Brassica rapa HOM05D000104 ORTHO05D003467 2.2e-26 124.4 247 32.4
BolC1t00695H Brassica oleracea HOM05D000104 ORTHO05D003467 4.8e-26 123.2 247 31.2
vmacro11232 Vaccinium macrocarpon HOM05D000104 ORTHO05D003467 6.3e-26 122.9 737 21.7
Nitab4.5_0000486g0110 Nicotiana tabacum HOM05D000104 ORTHO05D003467 4.1e-25 120.2 131 46.6
CBR_g16815 Chara braunii HOM05D000104 ORTHO05D003467 1.7e-18 98.2 164 36.6
Ca_13055_v3 Cicer arietinum L. HOM05D000104 ORTHO05D003467 4.1e-17 93.6 282 27.0
Nitab4.5_0000486g0100 Nicotiana tabacum HOM05D000104 ORTHO05D003467 2.0e-16 91.3 324 27.8
BraA03t15150Z Brassica rapa HOM05D000104 ORTHO05D003467 1.3e-15 88.6 255 25.9
BolC7t46345H Brassica oleracea HOM05D000104 ORTHO05D003467 2.9e-15 87.4 268 23.5
COL.COLO4_18937 Corchorus olitorius HOM05D000104 ORTHO05D003467 3.8e-15 87.0 90 44.4
Actinidia13200 Actinidia chinensis HOM05D000104 ORTHO05D003467 1.5e-14 85.1 193 30.1
Cre08.g377200 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D003467 1.9e-14 84.7 211 29.9
TPR.G25705 Trifolium pratense HOM05D002753 ORTHO05D003467 1.4e-12 78.6 117 39.3
HPP92_004610 Vanilla planifolia HOM05D000104 ORTHO05D003467 3.0e-12 77.4 95 45.3
HPP92_004609 Vanilla planifolia HOM05D000104 ORTHO05D003467 8.9e-12 75.9 173 31.8
AagrBONN_evm.TU.Sc2ySwM_344.1528 Anthoceros agrestis HOM05D000104 ORTHO05D003467 7.5e-11 72.8 250 26.0
SEGI_08777 Sequoiadendron giganteum HOM05D000104 ORTHO05D003467 2.3e-07 61.2 61 44.3
CSS0037562 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 3.0e-07 60.8 65 49.2
Gohir.D13G187950 Gossypium hirsutum HOM05D000104 ORTHO05D017166 3.9e-07 60.5 145 32.4
Oeu000760.1 Olea europaea HOM05D000104 ORTHO05D003467 3.9e-07 60.5 166 30.1
CSS0021251 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 5.0e-07 60.1 68 47.1
Haze_26150 Corylus avellana HOM05D000104 ORTHO05D003467 1.9e-06 58.2 120 32.5
CSS0029706 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D003467 4.3e-06 57.0 63 49.2
Atru.chr7.2523 Acer truncatum HOM05D000104 ORTHO05D017166 5.6e-06 56.6 136 27.9
Actinidia22434 Actinidia chinensis HOM05D002462 ORTHO05D002893 7.3e-06 56.2 189 27.0


User provided reference genes

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