Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 2.5e-132 476.9 308 100.0
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 7.0e-103 379.0 305 78.0
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 4.9e-72 276.6 241 58.1
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 2.3e-69 267.7 239 55.2
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.6e-67 261.5 194 61.9
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.6e-67 261.5 242 58.7
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 6.1e-67 259.6 240 60.4
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 1.4e-66 258.5 200 62.5
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 1.4e-66 258.5 192 63.5
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 1.4e-66 258.5 240 55.8
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 1.4e-66 258.5 241 57.7
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 1.8e-66 258.1 240 55.8
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 5.2e-66 256.5 242 52.5
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 6.8e-66 256.1 190 62.6
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 6.8e-66 256.1 242 57.0
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 8.9e-66 255.8 241 51.9
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 1.2e-65 255.4 242 56.6
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 1.5e-65 255.0 244 57.8
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 4.4e-65 253.4 243 56.8
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 5.8e-65 253.1 189 63.0
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 5.8e-65 253.1 240 57.5
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.7e-64 251.5 187 63.1
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.7e-64 251.5 196 60.2
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 2.2e-64 251.1 242 52.9
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 2.2e-64 251.1 194 61.3
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 8.3e-64 249.2 241 55.2
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 8.3e-64 249.2 248 51.6
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 1.9e-63 248.1 311 46.3
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 2.4e-63 247.7 238 52.9
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 1.2e-62 245.4 241 53.9
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 2.7e-62 244.2 195 59.0
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 4.6e-62 243.4 242 54.1
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 4.6e-62 243.4 240 53.3
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 6.0e-62 243.0 240 55.8
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 6.0e-62 243.0 240 55.8
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 6.0e-62 243.0 246 54.1
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 7.8e-62 242.7 185 61.1
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.3e-61 241.9 237 57.0
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 2.3e-61 241.1 191 57.6
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 2.3e-61 241.1 194 57.2
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 3.0e-61 240.7 243 53.9
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 3.9e-61 240.4 244 50.4
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 5.0e-61 240.0 283 47.3
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 6.6e-61 239.6 304 45.7
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.1e-60 238.8 243 57.6
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 1.9e-60 238.0 237 55.3
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.9e-60 238.0 232 55.6
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 1.9e-60 238.0 244 56.1
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.9e-60 238.0 236 55.9
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 3.3e-60 237.3 245 52.2
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 3.3e-60 237.3 242 56.2
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 5.6e-60 236.5 244 54.5
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 7.3e-60 236.1 190 57.9
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 7.3e-60 236.1 241 55.6
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 7.3e-60 236.1 241 53.9
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 9.5e-60 235.7 243 54.3
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 9.5e-60 235.7 238 50.8
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 1.6e-59 235.0 241 54.8
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 1.6e-59 235.0 241 54.8
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.6e-59 235.0 238 53.8
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 2.1e-59 234.6 246 52.8
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.8e-59 234.2 244 60.7
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 2.8e-59 234.2 194 55.2
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 4.7e-59 233.4 243 54.3
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 6.2e-59 233.0 189 59.8
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 8.0e-59 232.6 242 53.7
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 1.4e-58 231.9 237 51.5
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.4e-58 231.9 166 67.5
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 3.1e-58 230.7 245 51.0
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 3.1e-58 230.7 307 48.9
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 4.0e-58 230.3 239 54.0
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 8.9e-58 229.2 189 58.2
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 8.9e-58 229.2 198 56.1
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 1.2e-57 228.8 247 51.8
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.2e-57 228.8 198 56.1
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 1.5e-57 228.4 196 56.1
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 2.0e-57 228.0 247 51.4
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 2.0e-57 228.0 198 56.1
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 2.6e-57 227.6 316 49.7
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 2.6e-57 227.6 196 56.1
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 4.4e-57 226.9 247 52.2
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 7.5e-57 226.1 199 54.3
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 9.8e-57 225.7 182 57.7
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 1.3e-56 225.3 185 57.8
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 2.9e-56 224.2 184 58.7
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 4.9e-56 223.4 195 53.3
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 4.9e-56 223.4 201 53.7
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 1.1e-55 222.2 249 57.4
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.9e-55 221.5 244 52.9
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 3.2e-55 220.7 241 50.2
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 3.5e-54 217.2 196 53.1
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.5e-54 217.2 240 51.2
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 5.1e-53 213.4 185 55.7
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 1.9e-52 211.5 239 51.9
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 4.3e-52 210.3 179 54.2
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 3.4e-49 200.7 189 51.9
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 9.2e-47 192.6 212 48.6
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 1.9e-44 184.9 193 49.2
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 3.6e-43 180.6 148 58.8
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 2.0e-41 174.9 143 58.7
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 5.8e-41 173.3 183 45.4
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 5.4e-39 166.8 182 45.6
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.2e-38 165.6 182 45.1
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.0e-37 162.5 141 56.7
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 2.3e-37 161.4 130 60.0
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.2e-33 149.1 196 43.4
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.6e-33 147.9 91 75.8
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.2e-32 144.8 192 40.1
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.1e-31 142.5 126 56.3
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 1.1e-28 132.5 134 46.3
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 2.4e-26 124.8 78 69.2
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.2e-25 122.5 199 35.2
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.2e-24 118.2 75 68.0
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.3e-16 92.4 118 45.8
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 9.3e-15 86.3 147 37.4
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 2.8e-11 74.7 46 69.6
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 2.9e-08 64.7 39 71.8
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 2.1e-06 58.5 56 46.4
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 3.5e-06 57.8 45 60.0


User provided reference genes

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