Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os02g0750400 Oryza sativa ssp. japonica HOM05D006414 ORTHO05D007780 2.1e-115 419.1 213 100.0
Zm00001eb194340 Zea mays HOM05D006414 ORTHO05D007780 8.8e-42 174.5 124 71.8
BcaNung06694 Brassica carinata HOM05D006414 ORTHO05D007780 8.3e-40 167.9 175 50.3
Dinv19511 Davidia involucrata HOM05D006414 ORTHO05D007780 2.5e-36 156.4 119 59.7
arahy.Tifrunner.gnm1.ann1.5XR77C Arachis hypogaea HOM05D006414 ORTHO05D007780 1.3e-32 144.1 202 44.1
arahy.Tifrunner.gnm1.ann1.MF0H8V Arachis hypogaea HOM05D006414 ORTHO05D007780 1.3e-32 144.1 202 44.1
arahy.Tifrunner.gnm1.ann1.P8D3A6 Arachis hypogaea HOM05D006414 ORTHO05D007780 1.3e-32 144.1 202 44.1
arahy.Tifrunner.gnm1.ann1.Q5DT8W Arachis hypogaea HOM05D006414 ORTHO05D007780 1.3e-32 144.1 202 44.1
PGR004G0335 Punica granatum HOM05D006414 ORTHO05D007780 8.6e-29 131.3 107 57.9
Solyc04g054270.4 Solanum lycopersicum HOM05D006414 ORTHO05D007780 1.5e-28 130.6 121 56.2
Sopen04g023860 Solanum pennellii HOM05D006414 ORTHO05D007780 3.3e-28 129.4 121 55.4
TAR376G1012 Trochodendron aralioides HOM05D006414 ORTHO05D007780 1.8e-26 123.6 111 55.9
HanXRQChr07g0202341 Helianthus annuus HOM05D006414 ORTHO05D007780 2.3e-26 123.2 123 49.6
AUR62003321 Chenopodium quinoa HOM05D006414 ORTHO05D007780 1.2e-25 120.9 118 55.9
CAN.G382.6 Capsicum annuum HOM05D006414 ORTHO05D007780 3.4e-25 119.4 121 52.1
EL10Ac6g14730 Beta vulgaris HOM05D006414 ORTHO05D007780 4.4e-25 119.0 91 63.7
AUR62016261 Chenopodium quinoa HOM05D006414 ORTHO05D007780 5.7e-25 118.6 115 54.8
AUR62043752 Chenopodium quinoa HOM05D006414 ORTHO05D007780 5.7e-25 118.6 115 54.8
Manes.12G140500 Manihot esculenta HOM05D006414 ORTHO05D007780 7.5e-25 118.2 106 60.4
GSVIVG01022204001 Vitis vinifera HOM05D006414 ORTHO05D007780 7.5e-25 118.2 110 52.7
Atru.chr4.307 Acer truncatum HOM05D006414 ORTHO05D007780 9.8e-25 117.9 109 56.9
Lsat_1_v5_gn_2_117881 Lactuca sativa HOM05D006414 ORTHO05D007780 1.3e-24 117.5 106 55.7
PGSC0003DMG400012802 Solanum tuberosum HOM05D006414 ORTHO05D007780 1.3e-24 117.5 115 53.9
arahy.Tifrunner.gnm1.ann1.N3YXA0 Arachis hypogaea HOM05D006414 ORTHO05D007780 1.7e-24 117.1 112 52.7
Nitab4.5_0002133g0010 Nicotiana tabacum HOM05D006414 ORTHO05D007780 2.9e-24 116.3 97 59.8
Sc03g0004230 Simmondsia chinensis HOM05D006414 ORTHO05D007780 3.7e-24 115.9 116 53.4
Thecc.01G110400 Theobroma cacao HOM05D006414 ORTHO05D007780 3.7e-24 115.9 117 52.1
arahy.Tifrunner.gnm1.ann1.F90T56 Arachis hypogaea HOM05D006414 ORTHO05D007780 1.4e-23 114.0 108 53.7
ClCG01G019140 Citrullus lanatus HOM05D006414 ORTHO05D007780 2.4e-23 113.2 106 50.9
Ca_17703_v3 Cicer arietinum L. HOM05D006414 ORTHO05D007780 9.2e-23 111.3 109 50.5
Ah.03g149270 Amaranthus hybridus HOM05D006414 ORTHO05D007780 1.2e-22 110.9 120 50.8
arahy.Tifrunner.gnm1.ann1.S4ITMM Arachis hypogaea HOM05D006414 ORTHO05D007780 1.2e-22 110.9 98 57.1
CsaV3_6G045830 Cucumis sativus L. HOM05D006414 ORTHO05D007780 1.2e-22 110.9 103 51.5
MELO3C007791.2 Cucumis melo HOM05D006414 ORTHO05D007780 2.0e-22 110.2 99 53.5
Prupe.4G236100 Prunus persica HOM05D006414 ORTHO05D007780 2.0e-22 110.2 100 57.0
CSS0011059 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 3.5e-22 109.4 92 58.7
Haze_14271 Corylus avellana HOM05D006414 ORTHO05D007780 3.5e-22 109.4 96 60.4
MSTRG.2541 Avicennia marina HOM05D006414 ORTHO05D007780 4.6e-22 109.0 110 54.5
Peaxi162Scf01651g00012 Petunia axillaris HOM05D006414 ORTHO05D007780 4.6e-22 109.0 106 52.8
TWI74G0679 Tripterygium wilfordii HOM05D006414 ORTHO05D007780 4.6e-22 109.0 109 51.4
CSS0026013 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 1.7e-21 107.1 109 54.1
TPR.G2171 Trifolium pratense HOM05D006414 ORTHO05D007780 2.3e-21 106.7 125 48.0
vmacro18623 Vaccinium macrocarpon HOM05D006414 ORTHO05D007780 2.3e-21 106.7 91 57.1
Rhsim05G0180100 Rhododendron simsii HOM05D006414 ORTHO05D007780 3.9e-21 105.9 93 55.9
Thhalv10024997m.g Eutrema salsugineum HOM05D006414 ORTHO05D007780 6.6e-21 105.1 91 58.2
Rhsim08G0008000 Rhododendron simsii HOM05D006414 ORTHO05D007780 8.6e-21 104.8 93 53.8
SGA_v2.0_scaffold2G01307 Striga asiatica HOM05D006414 ORTHO05D007780 1.1e-20 104.4 104 52.9
Nitab4.5_0000156g0020 Nicotiana tabacum HOM05D006414 ORTHO05D007780 1.5e-20 104.0 89 59.6
Aa31LG6G15650 Aethionema arabicum HOM05D006414 ORTHO05D007780 4.3e-20 102.4 115 47.0
Oeu028531.1 Olea europaea HOM05D006414 ORTHO05D007780 5.6e-20 102.1 106 53.8
HPP92_016844 Vanilla planifolia HOM05D006414 ORTHO05D007780 5.6e-20 102.1 116 49.1
Migut.H02413 Erythranthe guttata HOM05D006414 ORTHO05D007780 9.5e-20 101.3 115 52.2
Potri.005G082400 Populus trichocarpa HOM05D006414 ORTHO05D007780 1.2e-19 100.9 103 52.4
Sed0012904 Sechium edule HOM05D006414 ORTHO05D007780 3.6e-19 99.4 95 52.6
DCAR_000987 Daucus carota HOM05D006414 ORTHO05D007780 4.7e-19 99.0 91 54.9
SalBow6G2882 Salvia bowleyana HOM05D006414 ORTHO05D007780 6.2e-19 98.6 102 52.9
SalBow6G7209 Salvia bowleyana HOM05D006414 ORTHO05D007780 6.2e-19 98.6 102 52.9
Lalb_Chr07g0184891 Lupinus albus HOM05D006414 ORTHO05D007780 8.0e-19 98.2 108 47.2
ATR0681G202 Amborella trichopoda HOM05D006414 ORTHO05D007780 1.0e-18 97.8 86 57.0
Sabra05G0067400 Salix brachista HOM05D006414 ORTHO05D007780 1.8e-18 97.1 109 48.6
ECA238G3570 Erigeron canadensis HOM05D006414 ORTHO05D007780 3.1e-18 96.3 88 53.4
Lj2A560T64 Lonicera japonica HOM05D006414 ORTHO05D007780 4.0e-18 95.9 107 45.8
Cc07_g15860 Coffea canephora HOM05D006414 ORTHO05D007780 5.2e-18 95.5 106 53.8
BcaNung00882 Brassica carinata HOM05D006414 ORTHO05D007780 2.6e-17 93.2 104 49.0
CiPaw.04G093800 Carya illinoinensis HOM05D006414 ORTHO05D007780 2.6e-17 93.2 89 56.2
SalBow8G2565 Salvia bowleyana HOM05D000608 ORTHO05D007780 4.4e-17 92.4 100 49.0
SalBow8G0663 Salvia bowleyana HOM05D000608 ORTHO05D007780 7.5e-17 91.7 117 43.6
unitig_27.g25358 Utricularia gibba HOM05D006414 ORTHO05D007780 1.7e-16 90.5 90 50.0
unitig_28.g29440 Utricularia gibba HOM05D006414 ORTHO05D007780 1.7e-16 90.5 90 50.0
A01p00510 Brassica napus HOM05D006414 ORTHO05D007780 6.4e-16 88.6 72 61.1
BraA01t00058Z Brassica rapa HOM05D006414 ORTHO05D007780 6.4e-16 88.6 72 61.1
C01p00660 Brassica napus HOM05D006414 ORTHO05D007780 8.3e-16 88.2 100 49.0
CARHR247110 Cardamine hirsuta HOM05D006414 ORTHO05D007780 2.4e-15 86.7 112 46.4
MD11G1203200 Malus domestica HOM05D006414 ORTHO05D007780 4.1e-15 85.9 70 64.3
Carub.0007s0149 Capsella rubella HOM05D006414 ORTHO05D007780 1.2e-14 84.3 88 51.1
Duzib147G0014 Durio zibethinus HOM05D006414 ORTHO05D007780 1.0e-13 81.3 81 53.1
Sp7g36270 Schrenkiella parvula HOM05D006414 ORTHO05D007780 2.3e-13 80.1 85 51.8
THA.LOC104807720 Tarenaya hassleriana HOM05D006414 ORTHO05D007780 3.0e-13 79.7 71 59.2
Medtr8g091670 Medicago truncatula HOM05D006414 ORTHO05D007780 3.3e-12 76.3 67 53.7
Psat7g051760 Pisum sativum HOM05D006414 ORTHO05D007780 5.6e-12 75.5 82 50.0
Eucgr.I00342 Eucalyptus grandis HOM05D006414 ORTHO05D007780 4.7e-11 72.4 71 53.5
AagrBONN_evm.TU.Sc2ySwM_344.419 Anthoceros agrestis HOM05D006414 ORTHO05D007780 6.2e-11 72.0 121 31.4
arahy.Tifrunner.gnm1.ann1.BPVH0U Arachis hypogaea HOM05D006414 ORTHO05D007780 3.1e-10 69.7 45 73.3
AT4G39620 Arabidopsis thaliana HOM05D006414 ORTHO05D007780 1.2e-09 67.8 94 43.6
VMungo0251G3283 Vigna mungo HOM05D006414 ORTHO05D007780 2.0e-09 67.0 47 63.8
Phvul.002G263600 Phaseolus vulgaris HOM05D006414 ORTHO05D007780 4.4e-09 65.9 65 50.8
Glyma.05G182700 Glycine max HOM05D006414 ORTHO05D007780 1.3e-08 64.3 60 58.3
Aqoxy6G00504 Aquilegia oxysepala HOM05D006414 ORTHO05D007780 2.2e-08 63.5 44 70.5
Sp3g30160 Schrenkiella parvula HOM05D005287 ORTHO05D006893 2.9e-08 63.2 147 27.2
ECA233G6190 Erigeron canadensis HOM05D007145 ORTHO05D008952 8.3e-08 61.6 170 27.1
SGA_v2.0_scaffold114G31953 Striga asiatica HOM05D000001 ORTHO05D009545 8.3e-08 61.6 132 28.8
Actinidia16042 Actinidia chinensis HOM05D006414 ORTHO05D007780 1.1e-07 61.2 44 63.6
CARHR107150 Cardamine hirsuta HOM05D005287 ORTHO05D006893 1.4e-07 60.8 145 26.2
Glyma.04G062100 Glycine max HOM05D000001 ORTHO05D000003 1.4e-07 60.8 179 26.3
BcaNung00919 Brassica carinata HOM05D000001 ORTHO05D000003 1.9e-07 60.5 159 25.8
PGR042G2179 Punica granatum HOM05D000001 ORTHO05D000003 2.4e-07 60.1 127 32.3
Phvul.009G249300 Phaseolus vulgaris HOM05D000001 ORTHO05D009862 3.2e-07 59.7 122 30.3
ECA247G1509 Erigeron canadensis HOM05D000001 ORTHO05D009862 5.4e-07 58.9 186 26.3
Glyma.09G043600 Glycine max HOM05D000001 ORTHO05D009862 5.4e-07 58.9 122 28.7
Psat1g155120 Pisum sativum HOM05D000001 ORTHO05D009862 5.4e-07 58.9 151 23.2
Glyma.08G140300 Glycine max HOM05D006414 ORTHO05D007780 7.1e-07 58.5 56 55.4
Lsat_1_v5_gn_1_30241 Lactuca sativa HOM05D000001 ORTHO05D009862 7.1e-07 58.5 122 27.9
EL10Ac8g20605 Beta vulgaris HOM05D000001 ORTHO05D007291 9.2e-07 58.2 160 26.9
MBI11_g15907_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 9.2e-07 58.2 160 26.2
SEGI_09862 Sequoiadendron giganteum HOM05D006106 ORTHO05D007662 9.2e-07 58.2 102 31.4
ATR1127G061 Amborella trichopoda HOM05D000001 ORTHO05D000003 1.2e-06 57.8 129 27.9
CSS0010402 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.2e-06 57.8 159 25.2
AagrBONN_evm.TU.Sc2ySwM_228.3876 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 57.4 205 25.9
CiPaw.13G038100 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.6e-06 57.4 123 29.3
Cc01_g05550 Coffea canephora HOM05D000001 ORTHO05D000003 1.6e-06 57.4 138 29.7
Lalb_Chr10g0107221 Lupinus albus HOM05D000001 ORTHO05D000003 1.6e-06 57.4 167 25.1
SMO273G0030 Selaginella moellendorffii HOM05D000001 ORTHO05D376995 1.6e-06 57.4 124 28.2
AagrBONN_evm.TU.Sc2ySwM_369.576__577 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-06 57.0 133 32.3
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 2.1e-06 57.0 145 25.5
Ca_01923_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009862 2.1e-06 57.0 167 24.6
Ca_06357_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 2.1e-06 57.0 179 25.7
Dinv13714 Davidia involucrata HOM05D000001 ORTHO05D009862 2.1e-06 57.0 122 28.7
Lalb_Chr15g0083421 Lupinus albus HOM05D000001 ORTHO05D009862 2.1e-06 57.0 123 27.6
Psat2g010600 Pisum sativum HOM05D000001 ORTHO05D000003 2.1e-06 57.0 167 22.8
VMungo1309G0570 Vigna mungo HOM05D000001 ORTHO05D009862 2.1e-06 57.0 122 29.5
Actinidia36510 Actinidia chinensis HOM05D000001 ORTHO05D009545 2.7e-06 56.6 147 28.6
MELO3C031784.2 Cucumis melo HOM05D000001 ORTHO05D009335 2.7e-06 56.6 109 30.3
Migut.K00830 Erythranthe guttata HOM05D000001 ORTHO05D009545 2.7e-06 56.6 132 29.5
Thhalv10000054m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 2.7e-06 56.6 199 25.6
Potri.005G137900 Populus trichocarpa HOM05D000001 ORTHO05D000003 2.7e-06 56.6 149 24.8
Lj6g0002092 Lotus japonicus HOM05D000001 ORTHO05D009862 3.5e-06 56.2 129 26.4
Nitab4.5_0004390g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.5e-06 56.2 171 24.6
BcaC01g02800 Brassica carinata HOM05D000001 ORTHO05D000003 4.6e-06 55.8 156 27.6
C03p60200 Brassica napus HOM05D000001 ORTHO05D000003 4.6e-06 55.8 156 27.6
BolC3t18282H Brassica oleracea HOM05D000001 ORTHO05D000003 4.6e-06 55.8 156 27.6
COL.COLO4_33271 Corchorus olitorius HOM05D000001 ORTHO05D000003 4.6e-06 55.8 137 29.2
SEGI_17609 Sequoiadendron giganteum HOM05D000001 ORTHO05D009747 4.6e-06 55.8 122 27.9
AagrBONN_evm.TU.Sc2ySwM_344.3453 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.0e-06 55.5 90 33.3
LjContig00272g0018740 Lotus japonicus HOM05D000001 ORTHO05D000003 6.0e-06 55.5 132 25.8
PGR044G1732 Punica granatum HOM05D000001 ORTHO05D000003 6.0e-06 55.5 165 26.7
QL06p032569 Quercus lobata HOM05D006414 ORTHO05D007780 6.0e-06 55.5 106 34.9
Rhsim03G0215000 Rhododendron simsii HOM05D000001 ORTHO05D000003 6.0e-06 55.5 161 24.2
arahy.Tifrunner.gnm1.ann1.LU4DEZ Arachis hypogaea HOM05D000001 ORTHO05D000003 7.8e-06 55.1 167 25.1
CSS0029690 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009545 7.8e-06 55.1 146 28.8
AUR62018354 Chenopodium quinoa HOM05D002649 ORTHO05D002838 7.8e-06 55.1 158 24.7
CsaV3_6G039060 Cucumis sativus L. HOM05D000001 ORTHO05D000003 7.8e-06 55.1 136 26.5
SEGI_33131 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 7.8e-06 55.1 123 26.0


User provided reference genes

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