Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn256s45908 Nelumbo nucifera HOM05D000216 ORTHO05D000634 5.6e-29 130.2 62 100.0
Nn2g14713 Nelumbo nucifera HOM05D000216 ORTHO05D000634 5.6e-29 130.2 62 100.0
Nn2g14718 Nelumbo nucifera HOM05D000216 ORTHO05D000634 5.6e-29 130.2 62 100.0
Nn2g14716 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.0e-22 107.8 50 100.0
Nn3g18112 Nelumbo nucifera HOM05D000216 ORTHO05D000634 7.3e-13 76.6 42 88.1
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
arahy.Tifrunner.gnm1.ann1.KRC0HM Arachis hypogaea HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
arahy.Tifrunner.gnm1.ann1.TW2HF4 Arachis hypogaea HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
arahy.Tifrunner.gnm1.ann1.ZJYB0J Arachis hypogaea HOM05D000216 ORTHO05D000473 2.8e-12 74.7 42 85.7
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 2.8e-12 74.7 42 85.7
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
BolC5t28870H Brassica oleracea HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
BolSC29t60451H Brassica oleracea HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
BolSC44t60847H Brassica oleracea HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
BraSC140t45588Z Brassica rapa HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
BraSC151t45695Z Brassica rapa HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
CAN.G939.14 Capsicum annuum HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
CARHR281920 Cardamine hirsuta HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
ECA169G0008 Erigeron canadensis HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
HanXRQChr03g0073121 Helianthus annuus HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
HanXRQChr14g0436631 Helianthus annuus HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 2.8e-12 74.7 42 85.7
Hma1.2p1_0094F.1_g047104 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
Lsat_1_v5_gn_9_5941 Lactuca sativa HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
Lj2P1224T100 Lonicera japonica HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
Lj2P1227T99 Lonicera japonica HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
Lalb_Chr09g0335371 Lupinus albus HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
Lalb_Chr22g0361661 Lupinus albus HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
SHI35296 Sapria himalayana HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
PGSC0003DMG400020296 Solanum tuberosum HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 2.8e-12 74.7 42 85.7
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 3.6e-12 74.3 42 83.3
Lj2A1237T129 Lonicera japonica HOM05D000216 ORTHO05D000634 3.6e-12 74.3 42 85.7
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 3.6e-12 74.3 42 85.7
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 3.6e-12 74.3 42 85.7
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 3.6e-12 74.3 42 85.7
Psat4g147920 Pisum sativum HOM05D000216 ORTHO05D000634 3.6e-12 74.3 42 85.7
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 3.6e-12 74.3 42 83.3
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 3.6e-12 74.3 42 83.3
SGA_v2.0_scaffold119G32687 Striga asiatica HOM05D000216 ORTHO05D000634 6.2e-12 73.6 42 83.3
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 8.1e-12 73.2 42 83.3
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 8.1e-12 73.2 40 87.5
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 8.1e-12 73.2 40 87.5
GSVIVG01017094001 Vitis vinifera HOM05D000216 ORTHO05D000634 8.1e-12 73.2 42 83.3
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 1.1e-11 72.8 42 83.3
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 1.1e-11 72.8 53 67.9
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 1.4e-11 72.4 42 83.3
FAN27G0873 Fragaria x ananassa HOM05D000743 ORTHO05D000580 1.4e-11 72.4 50 70.0
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 1.4e-11 72.4 42 81.0
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.8e-11 72.0 42 83.3
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.8e-11 72.0 42 83.3
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 3.1e-11 71.2 42 81.0
Nitab4.5_0001761g0170 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.1e-11 71.2 40 85.0
Hund18043 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund28153 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund28617 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-11 70.9 42 81.0
AUR62024082 Chenopodium quinoa HOM05D000216 ORTHO05D000634 5.2e-11 70.5 64 60.9
arahy.Tifrunner.gnm1.ann1.09TZAG Arachis hypogaea HOM05D000216 ORTHO05D000634 6.8e-11 70.1 42 81.0
Nitab4.5_0005637g0010 Nicotiana tabacum HOM05D000216 ORTHO05D000634 8.9e-11 69.7 42 81.0
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 5.8e-10 67.0 42 78.6
Solyc12g096910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 7.5e-10 66.6 37 83.8
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 9.8e-10 66.2 39 79.5
GSVIVG01019173001 Vitis vinifera HOM05D000216 ORTHO05D000634 9.8e-10 66.2 40 77.5
Ah.10g028700 Amaranthus hybridus HOM05D029963 ORTHO05D026499 1.3e-09 65.9 37 81.1
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 1.3e-09 65.9 39 74.4
HanXRQChr00c0300g0573171 Helianthus annuus HOM05D000216 ORTHO05D000634 2.2e-09 65.1 36 86.1
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.2e-09 65.1 36 86.1
Nitab4.5_0001783g0070 Nicotiana tabacum HOM05D000216 ORTHO05D002807 2.9e-09 64.7 42 76.2
CAN.G844.3 Capsicum annuum HOM05D000216 ORTHO05D000634 3.7e-09 64.3 39 76.9
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.7e-09 64.3 33 90.9
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.7e-09 64.3 33 90.9
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.7e-09 64.3 33 90.9
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.7e-09 64.3 33 90.9
Lalb_Chr06g0173021 Lupinus albus HOM05D000216 ORTHO05D000634 6.4e-09 63.5 43 74.4
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 6.4e-09 63.5 37 81.1
Migut.D01415 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.1e-08 62.8 37 81.1
Eucgr.J01352 Eucalyptus grandis HOM05D000216 ORTHO05D000634 1.1e-08 62.8 40 75.0
Gohir.D13G143950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.4e-08 61.6 42 73.8
EL10As27g24246 Beta vulgaris HOM05D000216 ORTHO05D007161 9.2e-08 59.7 42 73.8
arahy.Tifrunner.gnm1.ann1.7382T8 Arachis hypogaea HOM05D000216 ORTHO05D000634 1.2e-07 59.3 32 87.5
ClCG01G011260 Citrullus lanatus HOM05D000216 ORTHO05D000634 2.1e-07 58.5 42 66.7
Hund25861 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.8e-07 56.6 42 69.0
MELO3C001093.2 Cucumis melo HOM05D000216 ORTHO05D000634 2.3e-06 55.1 30 86.7


User provided reference genes

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