Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 3.4e-210 736.1 964 100.0
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 3.8e-132 476.9 338 73.7
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 2.2e-116 424.5 347 66.0
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 1.4e-110 405.2 348 64.7
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 1.3e-108 398.7 352 63.4
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 2.2e-103 381.3 341 63.0
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 9.0e-102 375.9 358 59.5
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 1.2e-101 375.6 356 60.1
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 4.2e-99 367.1 336 57.7
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 9.7e-96 355.9 336 60.1
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 3.7e-95 354.0 294 60.5
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 8.2e-95 352.8 344 57.6
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 7.7e-93 346.3 347 57.3
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 1.0e-92 345.9 330 58.2
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 2.9e-92 344.4 336 55.4
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 3.8e-92 344.0 291 60.5
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.1e-91 342.4 341 55.4
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 1.4e-91 342.0 342 55.3
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 4.2e-91 340.5 378 52.4
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 7.2e-91 339.7 348 54.6
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 3.6e-90 337.4 302 59.9
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.8e-89 335.1 299 59.2
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 1.8e-89 335.1 338 57.1
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.9e-89 334.0 341 54.5
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 1.5e-88 332.0 324 56.2
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 2.6e-88 331.3 352 53.1
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 5.7e-88 330.1 350 55.1
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 9.7e-88 329.3 336 57.4
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 9.7e-88 329.3 340 53.2
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 2.2e-87 328.2 356 53.1
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 2.8e-87 327.8 236 70.3
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 3.7e-87 327.4 294 60.2
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 6.3e-87 326.6 296 59.1
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 8.2e-87 326.2 369 51.5
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 1.1e-86 325.9 346 55.8
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 7.0e-86 323.2 279 60.9
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 1.5e-85 322.0 289 60.2
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 1.5e-85 322.0 265 63.4
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 1.5e-85 322.0 265 63.4
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 2.6e-85 321.2 285 61.4
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 2.6e-85 321.2 335 53.1
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 5.9e-85 320.1 340 56.8
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 1.0e-84 319.3 289 56.4
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 1.3e-84 318.9 348 54.3
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 2.9e-84 317.8 350 54.0
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 2.9e-84 317.8 258 64.3
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 1.1e-83 315.8 285 60.0
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 1.9e-83 315.1 340 53.2
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 1.9e-83 315.1 195 75.4
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 2.5e-83 314.7 342 53.2
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 3.2e-83 314.3 347 53.3
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 4.2e-83 313.9 242 63.6
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 9.4e-83 312.8 340 52.9
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 1.0e-81 309.3 343 53.9
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.8e-81 308.5 310 55.8
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 3.0e-81 307.8 310 55.8
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.9e-81 307.4 302 56.0
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 3.9e-81 307.4 321 53.0
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 3.9e-81 307.4 352 50.6
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 8.8e-81 306.2 340 51.8
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 8.8e-81 306.2 345 50.7
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 8.8e-81 306.2 210 70.0
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 1.1e-80 305.8 340 51.8
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.1e-80 305.8 279 58.4
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.6e-80 304.7 343 51.9
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 4.4e-80 303.9 271 57.9
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 1.7e-79 302.0 359 51.5
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 1.7e-79 302.0 308 54.5
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 2.8e-79 301.2 350 50.6
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 4.8e-79 300.4 335 54.9
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 7.0e-78 296.6 277 58.8
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 2.0e-77 295.0 344 50.3
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 2.0e-77 295.0 255 62.4
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 2.6e-77 294.7 341 52.8
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 1.7e-76 292.0 254 58.3
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 5.0e-76 290.4 319 50.2
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.7e-74 284.6 349 47.6
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 1.2e-72 279.3 279 55.9
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 2.2e-71 275.0 301 53.5
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.1e-70 270.8 298 51.3
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 2.0e-69 268.5 284 54.2
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 2.0e-69 268.5 281 54.8
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 2.0e-69 268.5 240 58.8
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 5.9e-69 266.9 302 53.0
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 3.8e-68 264.2 357 48.5
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 6.5e-68 263.5 343 48.4
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 6.5e-68 263.5 302 50.0
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 4.2e-67 260.8 268 53.7
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 7.2e-67 260.0 337 47.8
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 7.2e-67 260.0 245 53.9
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 2.7e-66 258.1 240 55.8
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 8.0e-66 256.5 355 45.1
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 6.8e-65 253.4 264 54.5
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 9.1e-62 243.0 287 53.3
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 3.5e-61 241.1 144 76.4
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.5e-61 240.7 165 67.3
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 1.1e-59 236.1 185 61.6
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 1.9e-59 235.3 143 75.5
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 2.3e-57 228.4 151 69.5
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 6.6e-52 210.3 218 48.6
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 8.0e-50 203.4 126 77.0
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 4.0e-49 201.1 201 53.2
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 5.4e-46 190.7 191 46.6
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 3.9e-44 184.5 183 48.1
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 5.6e-43 180.6 126 68.3
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.1e-35 156.4 182 44.5
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 3.3e-35 154.8 182 44.5
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 4.3e-35 154.5 134 67.9
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 2.1e-34 152.1 84 83.3
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 4.0e-33 147.9 97 76.3
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 8.9e-33 146.7 205 41.0
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.2e-32 146.4 186 39.2
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 9.9e-32 143.3 214 40.7
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.9e-31 141.7 114 65.8
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.2e-30 138.3 112 66.1
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 5.4e-30 137.5 125 58.4
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 7.1e-30 137.1 113 62.8
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 7.1e-30 137.1 117 61.5
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 9.2e-30 136.7 88 71.6
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 2.7e-29 135.2 111 63.1
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 3.5e-29 134.8 114 61.4
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.5e-29 134.8 96 63.5
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.0e-28 133.3 97 70.1
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 2.3e-28 132.1 81 75.3
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.5e-27 129.4 97 66.0
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 4.3e-27 127.9 118 56.8
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 2.1e-26 125.6 80 70.0
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 1.4e-25 122.9 98 63.3
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 7.8e-21 107.1 200 40.0
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 2.3e-20 105.5 69 76.8
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 2.2e-15 89.0 145 35.2
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 8.4e-15 87.0 68 67.6
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 6.6e-12 77.4 43 79.1
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 5.6e-11 74.3 85 48.2
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 2.1e-10 72.4 45 73.3
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 1.1e-09 70.1 45 71.1
Gohir.A03G075500 Gossypium hirsutum HOM05D000142 ORTHO05D001253 1.7e-07 62.8 94 40.4
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 4.9e-07 61.2 43 62.8
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 4.9e-07 61.2 43 62.8
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 8.4e-07 60.5 184 26.1
MD14G1167800 Malus domestica HOM05D000142 ORTHO05D001253 8.4e-07 60.5 111 34.2
Gorai.003G107700 Gossypium raimondii HOM05D000142 ORTHO05D001253 1.4e-06 59.7 94 38.3
Gohir.D03G102200 Gossypium hirsutum HOM05D000142 ORTHO05D001253 3.2e-06 58.5 92 38.0
Lalb_Chr04g0260661 Lupinus albus HOM05D001413 ORTHO05D001385 3.2e-06 58.5 141 34.0
CSS0014695 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D001253 5.4e-06 57.8 103 37.9
CSS0026670 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D001253 5.4e-06 57.8 103 37.9
Lalb_Chr07g0183131 Lupinus albus HOM05D000142 ORTHO05D001253 5.4e-06 57.8 127 33.1
VMungo1309G2545 Vigna mungo HOM05D000142 ORTHO05D001253 5.4e-06 57.8 104 34.6
Dinv33414 Davidia involucrata HOM05D000142 ORTHO05D001253 7.1e-06 57.4 100 36.0
HanXRQChr07g0199041 Helianthus annuus HOM05D000142 ORTHO05D001253 9.3e-06 57.0 102 35.3
Medtr4g104470 Medicago truncatula HOM05D000142 ORTHO05D001253 9.3e-06 57.0 96 36.5
TWI39G0379 Tripterygium wilfordii HOM05D000142 ORTHO05D001253 9.3e-06 57.0 91 37.4


User provided reference genes

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