Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 6.3e-180 634.0 329 100.0
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 9.5e-152 540.4 334 83.8
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 6.6e-145 517.7 331 80.7
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.3e-144 515.0 328 80.2
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 9.5e-144 513.8 328 79.9
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 2.4e-139 499.2 327 79.2
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.2e-139 498.8 327 77.7
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 4.1e-139 498.4 324 78.4
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 5.4e-139 498.0 322 77.0
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 9.2e-139 497.3 328 79.3
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 1.2e-138 496.9 345 74.5
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 1.2e-138 496.9 332 77.1
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.6e-138 496.5 329 78.7
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 2.3e-137 492.7 332 76.2
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.6e-135 486.5 327 76.5
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 2.1e-135 486.1 330 74.8
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 8.9e-134 480.7 329 76.9
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.2e-133 480.3 354 71.5
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 2.0e-133 479.6 329 72.6
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 2.0e-133 479.6 328 74.1
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 3.4e-133 478.8 330 74.8
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 4.4e-133 478.4 329 73.3
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 4.4e-133 478.4 329 75.7
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 1.3e-132 476.9 292 82.9
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 1.7e-132 476.5 327 74.9
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.9e-132 475.7 329 74.5
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 2.9e-132 475.7 328 74.4
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 3.7e-132 475.3 329 73.6
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 6.4e-132 474.6 327 73.1
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.4e-131 473.4 329 72.0
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 2.4e-131 472.6 329 72.9
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.4e-131 472.6 331 74.6
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 4.1e-131 471.9 325 75.4
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 4.1e-131 471.9 329 72.3
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.2e-130 470.3 331 74.0
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 2.0e-130 469.5 331 74.3
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 2.7e-130 469.2 331 74.0
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.7e-130 469.2 331 74.0
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 3.5e-130 468.8 329 72.3
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.6e-130 468.4 331 74.3
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 1.7e-129 466.5 329 72.0
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.9e-129 465.3 329 72.9
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 5.0e-129 464.9 328 73.8
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.1e-128 463.8 329 73.3
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 4.3e-128 461.8 324 74.7
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 7.3e-128 461.1 329 72.3
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 7.3e-128 461.1 329 70.8
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 4.7e-127 458.4 330 69.1
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 1.1e-126 457.2 329 72.9
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.4e-126 456.8 330 71.2
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 3.1e-126 455.7 400 61.8
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 4.0e-126 455.3 328 70.4
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 5.2e-126 454.9 330 68.8
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 8.9e-126 454.1 323 73.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 2.6e-125 452.6 328 70.1
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 2.6e-125 452.6 276 82.6
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 5.8e-125 451.4 328 70.1
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 5.8e-125 451.4 329 69.6
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 5.8e-125 451.4 328 69.8
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.7e-124 449.9 329 68.4
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 2.2e-124 449.5 328 70.4
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.9e-124 449.1 328 71.3
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.9e-124 449.1 360 66.4
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 3.7e-124 448.7 328 72.0
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.4e-124 448.0 328 68.9
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 8.3e-124 447.6 324 70.7
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 5.4e-123 444.9 328 68.9
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.7e-122 442.6 328 69.2
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.6e-122 441.8 329 70.2
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 4.6e-122 441.8 327 70.0
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 7.8e-122 441.0 363 66.4
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.3e-121 440.3 329 69.6
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 5.1e-121 438.3 328 67.7
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.5e-120 436.8 328 67.7
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.5e-120 436.8 328 67.4
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.2e-119 433.7 327 68.2
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 1.6e-119 433.3 332 68.4
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 1.8e-118 429.9 329 68.1
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 1.8e-118 429.9 329 68.1
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 2.4e-118 429.5 328 67.4
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 3.1e-118 429.1 329 68.4
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 8.9e-118 427.6 332 67.2
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 8.9e-118 427.6 326 67.5
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.3e-116 423.7 319 66.8
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 2.9e-116 422.5 327 66.4
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 3.8e-116 422.2 293 75.1
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.4e-115 420.2 327 65.4
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.4e-115 420.2 327 65.4
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.4e-115 419.5 323 67.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 5.4e-115 418.3 327 65.1
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 7.1e-115 417.9 323 67.8
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 1.2e-114 417.2 327 65.4
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.6e-114 416.8 330 67.6
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 2.1e-114 416.4 327 65.7
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 2.7e-114 416.0 327 65.1
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.7e-114 416.0 327 64.8
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.7e-113 413.3 327 65.1
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.9e-113 412.1 327 64.2
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.5e-112 410.2 323 65.3
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.6e-112 407.5 327 62.7
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 3.4e-109 399.1 328 64.3
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 5.8e-109 398.3 337 60.8
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 2.2e-108 396.4 329 63.2
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 3.5e-106 389.0 325 62.2
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 7.3e-104 381.3 328 62.5
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 4.8e-103 378.6 326 60.4
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 2.0e-101 373.2 333 63.1
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 6.9e-94 348.2 325 59.4
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 2.2e-92 343.2 276 65.9
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.9e-88 330.1 328 58.8
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 1.6e-87 327.0 330 54.8
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 1.8e-86 323.6 321 53.3
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.0e-85 320.1 318 54.7
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 2.9e-84 316.2 317 53.0
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 3.8e-84 315.8 329 54.4
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 6.0e-82 308.5 322 49.4
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 2.6e-77 293.1 199 74.4
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 6.1e-74 282.0 177 81.9
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 3.3e-72 276.2 320 48.1
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 5.3e-70 268.9 186 73.7
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.4e-67 260.8 197 68.5
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.6e-66 257.3 214 62.6
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 7.9e-66 255.0 286 45.8
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 8.5e-60 235.0 325 46.5
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 3.6e-58 229.6 293 43.0
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 3.0e-57 226.5 272 50.0
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 5.7e-56 222.2 160 68.8
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 2.8e-55 219.9 139 75.5
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.7e-55 219.5 336 41.1
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.2e-53 214.5 183 59.6
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 1.2e-48 198.0 133 77.4
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 3.7e-47 193.0 132 72.7
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 1.6e-45 187.6 135 68.9
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 5.9e-45 185.7 131 71.8
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 7.7e-45 185.3 267 40.8
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 2.2e-44 183.7 114 79.8
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.1e-42 177.2 303 37.0
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 3.0e-41 173.3 148 63.5
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 2.6e-40 170.2 130 70.8
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 4.4e-40 169.5 102 78.4
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.1e-38 164.9 316 33.9
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.8e-38 164.1 139 59.7
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.4e-38 163.7 181 49.2
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.0e-36 156.0 148 52.7
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.0e-33 148.3 144 54.2
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 4.0e-33 146.4 196 41.3
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.7e-29 133.7 127 52.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 2.7e-29 133.7 176 41.5
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 3.5e-29 133.3 82 73.2
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 5.9e-29 132.5 120 60.0
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.0e-28 131.7 147 46.9
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 6.1e-26 122.5 126 50.0
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 1.2e-24 118.2 196 40.3
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 3.9e-20 103.2 60 83.3
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.9e-15 87.0 96 49.0
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.9e-15 87.0 96 49.0
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 1.2e-13 81.6 59 67.8
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 2.7e-13 80.5 96 46.9
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 5.6e-11 72.8 121 41.3
BcaC07g36966 Brassica carinata HOM05D004465 ORTHO05D005450 1.3e-07 61.6 60 50.0
A08p37370 Brassica napus HOM05D004465 ORTHO05D005450 2.2e-07 60.8 51 56.9
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 7.1e-06 55.8 33 72.7


User provided reference genes

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