Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0014402g0010 Nicotiana tabacum HOM05D014113 ORTHO05D012820 2.0e-50 202.2 96 100.0
Nitab4.5_0006104g0020 Nicotiana tabacum HOM05D014113 ORTHO05D283895 9.2e-32 140.2 122 62.3
Nitab4.5_0010875g0010 Nicotiana tabacum HOM05D014113 ORTHO05D285585 5.8e-26 120.9 86 69.8
Nitab4.5_0014173g0020 Nicotiana tabacum HOM05D014113 ORTHO05D004737 2.7e-23 112.1 138 48.6
Nitab4.5_0007235g0010 Nicotiana tabacum HOM05D014113 ORTHO05D283086 2.1e-20 102.4 53 88.7
Nitab4.5_0005651g0040 Nicotiana tabacum HOM05D014113 ORTHO05D285372 1.1e-19 100.1 51 92.2
Nitab4.5_0005123g0010 Nicotiana tabacum HOM05D014113 ORTHO05D004737 2.3e-19 99.0 53 84.9
Nitab4.5_0003084g0030 Nicotiana tabacum HOM05D014113 ORTHO05D282805 9.2e-16 87.0 52 78.8
Nitab4.5_0008658g0020 Nicotiana tabacum HOM05D014113 ORTHO05D012820 1.6e-15 86.3 164 39.0
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 2.5e-13 79.0 41 87.8
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 2.5e-13 79.0 41 87.8
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Nitab4.5_0006753g0010 Nicotiana tabacum HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Oeu019307.1 Olea europaea HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
PGSC0003DMG400015258 Solanum tuberosum HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
unitig_8.g3063 Utricularia gibba HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 5.6e-13 77.8 41 87.8
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 7.3e-13 77.4 41 85.4
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
BolC5t33519H Brassica oleracea HOM05D000688 ORTHO05D012820 1.2e-12 76.6 41 85.4
BolC5t33550H Brassica oleracea HOM05D000688 ORTHO05D012820 1.2e-12 76.6 41 85.4
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 1.2e-12 76.6 41 85.4
CSS0020218 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 1.6e-12 76.3 41 85.4
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 1.6e-12 76.3 41 82.9
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 1.6e-12 76.3 41 82.9
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 1.6e-12 76.3 41 82.9
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 1.6e-12 76.3 41 82.9
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 2.1e-12 75.9 84 51.2
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.1e-12 75.9 84 51.2
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.1e-12 75.9 84 51.2
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.1e-12 75.9 84 51.2
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.1e-12 75.9 84 51.2
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 2.1e-12 75.9 84 51.2
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 2.1e-12 75.9 40 87.5
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 2.8e-12 75.5 41 82.9
AL3G38680 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 2.8e-12 75.5 41 82.9
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 2.8e-12 75.5 41 80.5
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 2.8e-12 75.5 41 85.4
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 2.8e-12 75.5 41 82.9
Nitab4.5_0002575g0060 Nicotiana tabacum HOM05D000688 ORTHO05D004737 2.8e-12 75.5 41 85.4
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 2.8e-12 75.5 41 82.9
Sabra18G0021700 Salix brachista HOM05D000688 ORTHO05D004737 2.8e-12 75.5 41 82.9
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 2.8e-12 75.5 41 82.9
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 3.6e-12 75.1 41 82.9
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 4.7e-12 74.7 40 85.0
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 4.7e-12 74.7 40 85.0
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 4.7e-12 74.7 41 82.9
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 4.7e-12 74.7 40 85.0
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 4.7e-12 74.7 40 85.0
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 4.7e-12 74.7 41 80.5
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 6.2e-12 74.3 41 82.9
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 8.1e-12 73.9 41 80.5
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 1.1e-11 73.6 41 80.5
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 1.1e-11 73.6 41 80.5
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 1.1e-11 73.6 41 80.5
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 1.1e-11 73.6 41 80.5
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 1.1e-11 73.6 41 80.5
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 1.1e-11 73.6 41 80.5
Nitab4.5_0001723g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 1.1e-11 73.6 41 82.9
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 1.1e-11 73.6 40 82.5
Nitab4.5_0006627g0050 Nicotiana tabacum HOM05D000688 ORTHO05D004737 1.4e-11 73.2 62 59.7
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 1.4e-11 73.2 41 78.0
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 1.4e-11 73.2 41 78.0
Aqoxy5G02323 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 1.8e-11 72.8 60 58.3
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 1.8e-11 72.8 41 80.5
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 2.3e-11 72.4 41 78.0
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 2.3e-11 72.4 41 80.5
CDE08G0368 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 3.1e-11 72.0 41 78.0
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 3.1e-11 72.0 40 82.5
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 3.1e-11 72.0 41 78.0
ATR0564G243 Amborella trichopoda HOM05D000688 ORTHO05D004737 5.2e-11 71.2 40 80.0
BcaC05g28676 Brassica carinata HOM05D000688 ORTHO05D004737 5.2e-11 71.2 41 80.5
BolC5t33527H Brassica oleracea HOM05D000688 ORTHO05D004737 5.2e-11 71.2 41 80.5
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 6.8e-11 70.9 41 75.6
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 6.8e-11 70.9 41 75.6
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 6.8e-11 70.9 41 75.6
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 1.5e-10 69.7 41 75.6
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 2.0e-10 69.3 39 76.9
Zm00001eb415030 Zea mays HOM05D000688 ORTHO05D004737 3.4e-10 68.6 39 74.4
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 4.4e-10 68.2 39 76.9
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 1.3e-09 66.6 40 70.0
Os08g0171600 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 2.2e-09 65.9 39 71.8
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 2.9e-09 65.5 41 70.7
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 6.4e-09 64.3 40 67.5
Nitab4.5_0011741g0020 Nicotiana tabacum HOM05D007931 ORTHO05D010331 6.4e-09 64.3 37 81.1
Nitab4.5_0008276g0030 Nicotiana tabacum HOM05D000229 ORTHO05D005155 1.4e-08 63.2 35 82.9
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 1.9e-08 62.8 40 67.5
SEGI_32927 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 2.4e-08 62.4 41 65.9
BraA01t03702Z Brassica rapa HOM05D000688 ORTHO05D012820 3.2e-08 62.0 36 72.2
Potri.006G263900 Populus trichocarpa HOM05D000688 ORTHO05D004737 7.1e-08 60.8 35 77.1
SEGI_35893 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 7.1e-08 60.8 40 70.0
A01p36300 Brassica napus HOM05D000688 ORTHO05D012820 9.2e-08 60.5 36 69.4
ECA238G0018 Erigeron canadensis HOM05D000688 ORTHO05D004737 9.2e-08 60.5 40 62.5
SEGI_08147 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 9.2e-08 60.5 40 67.5
Mapoly0058s0108 Marchantia polymorpha HOM05D000688 ORTHO05D004737 3.5e-07 58.5 38 68.4
Ah.10g035680 Amaranthus hybridus HOM05D000688 ORTHO05D004737 6.0e-07 57.8 32 78.1
BcaB06g26194 Brassica carinata HOM05D000688 ORTHO05D012820 2.3e-06 55.8 41 70.7
Nitab4.5_0000958g0060 Nicotiana tabacum HOM05D014113 ORTHO05D284415 5.1e-06 54.7 29 89.7
SMO116G0209 Selaginella moellendorffii HOM05D000688 ORTHO05D004737 6.6e-06 54.3 38 65.8


User provided reference genes

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