Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0014173g0020 Nicotiana tabacum HOM05D014113 ORTHO05D004737 1.5e-86 322.8 157 100.0
Nitab4.5_0006104g0020 Nicotiana tabacum HOM05D014113 ORTHO05D283895 1.0e-42 177.2 124 73.4
Nitab4.5_0005123g0010 Nicotiana tabacum HOM05D014113 ORTHO05D004737 1.6e-40 169.9 152 63.2
Nitab4.5_0008658g0020 Nicotiana tabacum HOM05D014113 ORTHO05D012820 7.4e-38 161.0 156 59.0
Nitab4.5_0007235g0010 Nicotiana tabacum HOM05D014113 ORTHO05D283086 5.3e-36 154.8 82 91.5
Nitab4.5_0005651g0040 Nicotiana tabacum HOM05D014113 ORTHO05D285372 2.6e-35 152.5 96 80.2
Nitab4.5_0008276g0030 Nicotiana tabacum HOM05D000229 ORTHO05D005155 4.4e-30 135.2 82 80.5
Nitab4.5_0009508g0010 Nicotiana tabacum HOM05D014113 ORTHO05D004737 4.5e-27 125.2 110 63.6
Nitab4.5_0014402g0010 Nicotiana tabacum HOM05D014113 ORTHO05D012820 3.0e-23 112.5 138 48.6
Nitab4.5_0003084g0030 Nicotiana tabacum HOM05D014113 ORTHO05D282805 3.4e-22 109.0 160 45.0
Nitab4.5_0010875g0010 Nicotiana tabacum HOM05D014113 ORTHO05D285585 3.8e-18 95.5 124 46.0
Nitab4.5_0001723g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 1.4e-15 87.0 65 69.2
Nitab4.5_0002575g0060 Nicotiana tabacum HOM05D000688 ORTHO05D004737 1.5e-14 83.6 72 66.7
Nitab4.5_0006627g0050 Nicotiana tabacum HOM05D000688 ORTHO05D004737 2.6e-14 82.8 44 88.6
Nitab4.5_0006753g0010 Nicotiana tabacum HOM05D000688 ORTHO05D004737 2.6e-14 82.8 72 65.3
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 3.4e-14 82.4 72 65.3
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 5.7e-14 81.6 72 65.3
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 7.5e-14 81.3 69 65.2
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 7.5e-14 81.3 72 63.9
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 7.5e-14 81.3 72 63.9
PGSC0003DMG400015258 Solanum tuberosum HOM05D000688 ORTHO05D004737 7.5e-14 81.3 72 63.9
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 1.3e-13 80.5 44 86.4
Oeu019307.1 Olea europaea HOM05D000688 ORTHO05D004737 1.3e-13 80.5 59 71.2
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 1.3e-13 80.5 72 63.9
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 1.3e-13 80.5 44 86.4
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 1.3e-13 80.5 59 71.2
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 1.3e-13 80.5 59 71.2
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 2.2e-13 79.7 59 71.2
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 2.2e-13 79.7 59 71.2
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 2.2e-13 79.7 59 71.2
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
unitig_8.g3063 Utricularia gibba HOM05D000688 ORTHO05D004737 2.8e-13 79.3 44 86.4
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 3.7e-13 79.0 44 86.4
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 3.7e-13 79.0 44 84.1
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 4.9e-13 78.6 59 71.2
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
BolC5t33519H Brassica oleracea HOM05D000688 ORTHO05D012820 6.3e-13 78.2 44 84.1
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 6.3e-13 78.2 44 84.1
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 8.3e-13 77.8 44 81.8
CSS0020218 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 8.3e-13 77.8 44 84.1
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 8.3e-13 77.8 44 81.8
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 8.3e-13 77.8 59 69.5
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 8.3e-13 77.8 44 81.8
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 8.3e-13 77.8 44 81.8
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 8.3e-13 77.8 44 81.8
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 1.4e-12 77.0 44 81.8
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 1.4e-12 77.0 44 79.5
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 1.4e-12 77.0 44 84.1
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.4e-12 77.0 72 62.5
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 1.4e-12 77.0 44 81.8
Sabra18G0021700 Salix brachista HOM05D000688 ORTHO05D004737 1.4e-12 77.0 44 81.8
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 1.4e-12 77.0 44 81.8
BolC5t33550H Brassica oleracea HOM05D000688 ORTHO05D012820 1.8e-12 76.6 43 83.7
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.8e-12 76.6 43 83.7
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 1.8e-12 76.6 43 83.7
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.8e-12 76.6 43 83.7
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.8e-12 76.6 43 83.7
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.8e-12 76.6 43 83.7
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.8e-12 76.6 43 83.7
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.8e-12 76.6 43 83.7
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 1.8e-12 76.6 43 83.7
Nitab4.5_0000958g0060 Nicotiana tabacum HOM05D014113 ORTHO05D284415 1.8e-12 76.6 50 70.0
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 1.8e-12 76.6 43 83.7
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 1.8e-12 76.6 44 81.8
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 2.4e-12 76.3 44 81.8
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 2.4e-12 76.3 44 79.5
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 3.1e-12 75.9 44 81.8
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 4.1e-12 75.5 44 79.5
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 4.1e-12 75.5 72 58.3
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 4.1e-12 75.5 72 58.3
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 4.1e-12 75.5 43 81.4
Aqoxy5G02323 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 5.4e-12 75.1 59 64.4
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 5.4e-12 75.1 44 79.5
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 5.4e-12 75.1 44 79.5
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 5.4e-12 75.1 44 79.5
Nitab4.5_0002565g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 5.4e-12 75.1 67 64.2
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 5.4e-12 75.1 44 81.8
CDE08G0368 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 9.2e-12 74.3 44 79.5
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 9.2e-12 74.3 44 79.5
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 9.2e-12 74.3 59 66.1
AL3G38680 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 1.2e-11 73.9 44 79.5
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.2e-11 73.9 43 81.4
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 1.6e-11 73.6 44 77.3
ATR0564G243 Amborella trichopoda HOM05D000688 ORTHO05D004737 2.0e-11 73.2 43 79.1
BcaC05g28676 Brassica carinata HOM05D000688 ORTHO05D004737 2.7e-11 72.8 44 79.5
BolC5t33527H Brassica oleracea HOM05D000688 ORTHO05D004737 2.7e-11 72.8 44 79.5
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 3.5e-11 72.4 44 75.0
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 3.5e-11 72.4 44 75.0
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 3.5e-11 72.4 44 75.0
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 7.8e-11 71.2 44 72.7
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 7.8e-11 71.2 44 75.0
Zm00001eb415030 Zea mays HOM05D000688 ORTHO05D004737 1.3e-10 70.5 44 70.5
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.7e-10 70.1 44 72.7
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 5.0e-10 68.6 59 57.6
Os08g0171600 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 5.0e-10 68.6 44 70.5
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 1.5e-09 67.0 44 70.5
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 2.5e-09 66.2 59 55.9
SEGI_32927 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 4.3e-09 65.5 44 68.2
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 7.3e-09 64.7 46 65.2
SEGI_35893 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 7.3e-09 64.7 81 48.1
ECA238G0018 Erigeron canadensis HOM05D000688 ORTHO05D004737 9.5e-09 64.3 43 65.1
BraA01t03702Z Brassica rapa HOM05D000688 ORTHO05D012820 1.2e-08 63.9 39 71.8
SEGI_08147 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 1.2e-08 63.9 43 69.8
A01p36300 Brassica napus HOM05D000688 ORTHO05D012820 3.6e-08 62.4 39 69.2
Mapoly0058s0108 Marchantia polymorpha HOM05D000688 ORTHO05D004737 4.7e-08 62.0 41 70.7
Nitab4.5_0011741g0020 Nicotiana tabacum HOM05D007931 ORTHO05D010331 5.2e-07 58.5 37 75.7
Pp3c4_16140 Physcomitrium patens HOM05D000688 ORTHO05D004737 5.2e-07 58.5 41 61.0
BcaB06g26194 Brassica carinata HOM05D000688 ORTHO05D012820 1.5e-06 57.0 44 70.5
FAN04G2303 Fragaria x ananassa HOM05D000688 ORTHO05D005697 1.5e-06 57.0 41 65.9
Pp3c15_16480 Physcomitrium patens HOM05D000688 ORTHO05D004737 1.5e-06 57.0 41 61.0
AagrBONN_evm.TU.Sc2ySwM_228.1461 Anthoceros agrestis HOM05D000688 ORTHO05D004737 2.6e-06 56.2 41 63.4
Potri.006G263900 Populus trichocarpa HOM05D000688 ORTHO05D004737 2.6e-06 56.2 33 75.8
SMO116G0209 Selaginella moellendorffii HOM05D000688 ORTHO05D004737 3.4e-06 55.8 42 61.9
ATR0737G024 Amborella trichopoda HOM05D000688 ORTHO05D003888 5.8e-06 55.1 42 61.9
SMO228G0181 Selaginella moellendorffii HOM05D000688 ORTHO05D004737 5.8e-06 55.1 49 51.0


User provided reference genes

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