Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009508g0010 Nicotiana tabacum HOM05D014113 ORTHO05D004737 1.9e-96 355.9 189 100.0
Nitab4.5_0008658g0020 Nicotiana tabacum HOM05D014113 ORTHO05D012820 1.5e-40 170.2 189 52.9
Nitab4.5_0005123g0010 Nicotiana tabacum HOM05D014113 ORTHO05D004737 1.1e-32 144.1 128 62.5
Nitab4.5_0014173g0020 Nicotiana tabacum HOM05D014113 ORTHO05D004737 3.2e-27 125.9 110 63.6
Nitab4.5_0007235g0010 Nicotiana tabacum HOM05D014113 ORTHO05D283086 3.9e-25 119.0 154 50.0
Nitab4.5_0003807g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 2.8e-23 112.8 189 45.0
Nitab4.5_0005651g0040 Nicotiana tabacum HOM05D014113 ORTHO05D285372 2.2e-20 103.2 56 85.7
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 1.3e-17 94.0 51 90.2
Nitab4.5_0006753g0010 Nicotiana tabacum HOM05D000688 ORTHO05D004737 1.8e-17 93.6 51 88.2
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 3.0e-17 92.8 51 88.2
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 3.0e-17 92.8 51 88.2
PGSC0003DMG400015258 Solanum tuberosum HOM05D000688 ORTHO05D004737 3.0e-17 92.8 51 88.2
Nitab4.5_0002575g0060 Nicotiana tabacum HOM05D000688 ORTHO05D004737 3.9e-17 92.4 51 88.2
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 5.1e-17 92.0 51 88.2
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 1.9e-16 90.1 51 86.3
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 2.5e-16 89.7 51 86.3
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 2.5e-16 89.7 51 86.3
Oeu019307.1 Olea europaea HOM05D000688 ORTHO05D004737 3.3e-16 89.4 49 87.8
Nitab4.5_0005346g0010 Nicotiana tabacum HOM05D000688 ORTHO05D012820 9.6e-16 87.8 51 82.4
Nitab4.5_0001723g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 1.6e-15 87.0 51 82.4
Nitab4.5_0006104g0020 Nicotiana tabacum HOM05D014113 ORTHO05D283895 2.1e-15 86.7 104 50.0
Nitab4.5_0008276g0030 Nicotiana tabacum HOM05D000229 ORTHO05D005155 2.8e-15 86.3 56 75.0
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 3.7e-15 85.9 49 85.7
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 3.7e-15 85.9 49 85.7
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 3.7e-15 85.9 49 85.7
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 4.8e-15 85.5 51 80.4
Nitab4.5_0006627g0050 Nicotiana tabacum HOM05D000688 ORTHO05D004737 4.8e-15 85.5 51 84.3
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 1.1e-14 84.3 49 81.6
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 1.1e-14 84.3 49 81.6
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 1.4e-14 84.0 49 81.6
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.8e-14 83.6 49 79.6
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.8e-14 83.6 49 79.6
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 1.8e-14 83.6 49 81.6
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 2.4e-14 83.2 49 77.6
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.4e-14 83.2 49 81.6
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.4e-14 83.2 49 81.6
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.4e-14 83.2 49 81.6
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 2.4e-14 83.2 49 79.6
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 2.4e-14 83.2 52 73.1
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 2.4e-14 83.2 52 73.1
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 3.1e-14 82.8 49 77.6
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 3.1e-14 82.8 49 79.6
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 3.1e-14 82.8 51 80.4
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 4.0e-14 82.4 49 79.6
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 5.3e-14 82.0 49 77.6
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 5.3e-14 82.0 49 79.6
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 5.3e-14 82.0 48 81.2
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 5.3e-14 82.0 49 79.6
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 5.3e-14 82.0 49 77.6
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 5.3e-14 82.0 49 79.6
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 6.9e-14 81.6 49 77.6
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 6.9e-14 81.6 49 77.6
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 6.9e-14 81.6 49 77.6
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 6.9e-14 81.6 49 77.6
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 6.9e-14 81.6 49 77.6
Sabra18G0021700 Salix brachista HOM05D000688 ORTHO05D004737 6.9e-14 81.6 49 77.6
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 9.0e-14 81.3 49 79.6
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 9.0e-14 81.3 49 77.6
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 1.2e-13 80.9 49 75.5
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.2e-13 80.9 49 75.5
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 1.2e-13 80.9 49 77.6
unitig_8.g3063 Utricularia gibba HOM05D000688 ORTHO05D004737 1.2e-13 80.9 49 79.6
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 1.5e-13 80.5 49 77.6
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 1.5e-13 80.5 49 77.6
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 1.5e-13 80.5 49 77.6
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 1.5e-13 80.5 49 77.6
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 2.0e-13 80.1 49 77.6
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 2.0e-13 80.1 49 77.6
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 2.0e-13 80.1 49 75.5
Nitab4.5_0003084g0030 Nicotiana tabacum HOM05D014113 ORTHO05D282805 2.0e-13 80.1 134 39.6
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 2.0e-13 80.1 49 75.5
CSS0020218 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.6e-13 79.7 49 77.6
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 3.4e-13 79.3 48 77.1
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 3.4e-13 79.3 49 77.6
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 5.8e-13 78.6 49 73.5
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 1.0e-12 77.8 49 73.5
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 1.0e-12 77.8 49 73.5
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.7e-12 77.0 49 71.4
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.7e-12 77.0 49 71.4
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 1.7e-12 77.0 49 75.5
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 1.7e-12 77.0 49 73.5
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 1.7e-12 77.0 49 73.5
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 73.5
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 73.5
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 71.4
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 73.5
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 73.5
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 73.5
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 2.2e-12 76.6 48 75.0
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 73.5
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 73.5
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 73.5
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 73.5
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 71.4
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 2.2e-12 76.6 49 73.5
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 2.9e-12 76.3 52 67.3
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 2.9e-12 76.3 49 73.5
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 3.8e-12 75.9 49 69.4
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 3.8e-12 75.9 48 72.9
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 3.8e-12 75.9 48 72.9
CDE08G0368 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 4.9e-12 75.5 80 53.8
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 4.9e-12 75.5 45 77.8
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 6.5e-12 75.1 49 69.4
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 8.4e-12 74.7 49 71.4
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 1.1e-11 74.3 49 71.4
AL3G38680 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 1.1e-11 74.3 49 71.4
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 1.1e-11 74.3 49 71.4
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 1.1e-11 74.3 49 71.4
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 1.1e-11 74.3 49 71.4
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 1.1e-11 74.3 49 69.4
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 1.1e-11 74.3 49 69.4
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 1.4e-11 73.9 49 69.4
Aqoxy5G02323 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 1.9e-11 73.6 48 70.8
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 1.9e-11 73.6 49 69.4
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 1.9e-11 73.6 51 70.6
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 1.9e-11 73.6 49 71.4
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 2.5e-11 73.2 49 69.4
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 3.2e-11 72.8 49 67.3
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 4.2e-11 72.4 49 69.4
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 4.2e-11 72.4 49 69.4
BolC5t33519H Brassica oleracea HOM05D000688 ORTHO05D012820 4.2e-11 72.4 49 69.4
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 4.2e-11 72.4 49 69.4
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 5.5e-11 72.0 49 67.3
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.5e-11 72.0 49 67.3
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.5e-11 72.0 49 67.3
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.5e-11 72.0 49 67.3
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.5e-11 72.0 49 67.3
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.5e-11 72.0 49 67.3
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 5.5e-11 72.0 49 69.4
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 7.1e-11 71.6 49 67.3
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 9.3e-11 71.2 59 59.3
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 9.3e-11 71.2 49 67.3
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 9.3e-11 71.2 49 67.3
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 1.2e-10 70.9 49 67.3
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 1.6e-10 70.5 49 67.3
BolC5t33550H Brassica oleracea HOM05D000688 ORTHO05D012820 2.1e-10 70.1 43 76.7
Nitab4.5_0002565g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 2.1e-10 70.1 51 72.5
BcaC05g28676 Brassica carinata HOM05D000688 ORTHO05D004737 4.6e-10 68.9 43 74.4
BolC5t33527H Brassica oleracea HOM05D000688 ORTHO05D004737 4.6e-10 68.9 43 74.4
RcHm_v2.0_Chr5g0042221 Rosa chinensis HOM05D000688 ORTHO05D012820 4.6e-10 68.9 51 66.7
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 6.1e-10 68.6 49 69.4
Zm00001eb415030 Zea mays HOM05D000688 ORTHO05D004737 6.1e-10 68.6 48 64.6
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 7.9e-10 68.2 52 65.4
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 7.9e-10 68.2 48 66.7
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 7.9e-10 68.2 48 66.7
ECA238G0018 Erigeron canadensis HOM05D000688 ORTHO05D004737 1.3e-09 67.4 48 64.6
Nitab4.5_0000958g0060 Nicotiana tabacum HOM05D014113 ORTHO05D284415 1.3e-09 67.4 181 35.4
ATR0564G243 Amborella trichopoda HOM05D000688 ORTHO05D004737 6.7e-09 65.1 51 62.7
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 8.7e-09 64.7 48 62.5
Os08g0171600 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 1.8e-06 57.0 53 52.8
Potri.006G263900 Populus trichocarpa HOM05D000688 ORTHO05D004737 4.1e-06 55.8 37 67.6


User provided reference genes

Program Settings