Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0008658g0020 Nicotiana tabacum HOM05D014113 ORTHO05D012820 1.3e-97 359.8 184 100.0
Nitab4.5_0005123g0010 Nicotiana tabacum HOM05D014113 ORTHO05D004737 8.7e-62 240.7 171 74.9
Nitab4.5_0007235g0010 Nicotiana tabacum HOM05D014113 ORTHO05D283086 2.9e-49 199.1 130 81.5
Nitab4.5_0005651g0040 Nicotiana tabacum HOM05D014113 ORTHO05D285372 4.0e-43 178.7 194 54.6
Nitab4.5_0009508g0010 Nicotiana tabacum HOM05D014113 ORTHO05D004737 2.0e-42 176.4 189 52.9
Nitab4.5_0014173g0020 Nicotiana tabacum HOM05D014113 ORTHO05D004737 3.9e-38 162.2 156 59.0
Nitab4.5_0006104g0020 Nicotiana tabacum HOM05D014113 ORTHO05D283895 1.0e-33 147.5 164 53.7
Nitab4.5_0003084g0030 Nicotiana tabacum HOM05D014113 ORTHO05D282805 1.3e-33 147.1 182 50.5
Nitab4.5_0008276g0030 Nicotiana tabacum HOM05D000229 ORTHO05D005155 2.2e-28 129.8 88 72.7
Nitab4.5_0001723g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 3.4e-26 122.5 66 87.9
Nitab4.5_0006753g0010 Nicotiana tabacum HOM05D000688 ORTHO05D004737 5.9e-26 121.7 66 87.9
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 1.3e-25 120.6 66 87.9
Nitab4.5_0002575g0060 Nicotiana tabacum HOM05D000688 ORTHO05D004737 1.3e-25 120.6 66 87.9
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 2.9e-25 119.4 66 86.4
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 2.9e-25 119.4 66 86.4
PGSC0003DMG400015258 Solanum tuberosum HOM05D000688 ORTHO05D004737 2.9e-25 119.4 66 86.4
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 5.0e-25 118.6 66 86.4
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 2.5e-24 116.3 66 84.8
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 2.5e-24 116.3 66 84.8
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 2.5e-24 116.3 66 83.3
Nitab4.5_0005346g0010 Nicotiana tabacum HOM05D000688 ORTHO05D012820 9.4e-24 114.4 66 81.8
Nitab4.5_0006627g0050 Nicotiana tabacum HOM05D000688 ORTHO05D004737 1.2e-23 114.0 66 84.8
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 1.4e-22 110.5 66 78.8
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 2.3e-22 109.8 67 82.1
Oeu019307.1 Olea europaea HOM05D000688 ORTHO05D004737 2.3e-22 109.8 67 80.6
Nitab4.5_0003807g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 3.9e-22 109.0 114 52.6
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 1.5e-21 107.1 67 80.6
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 1.5e-21 107.1 67 80.6
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 4.3e-21 105.5 67 79.1
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 7.4e-21 104.8 67 76.1
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 9.7e-21 104.4 67 76.1
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 9.7e-21 104.4 67 74.6
CSS0020218 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 1.3e-20 104.0 67 76.1
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 1.3e-20 104.0 91 60.4
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 1.3e-20 104.0 67 76.1
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 1.3e-20 104.0 67 76.1
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 2.2e-20 103.2 91 59.3
Nitab4.5_0002565g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 2.8e-20 102.8 66 77.3
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 2.8e-20 102.8 68 72.1
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 2.8e-20 102.8 68 72.1
unitig_8.g3063 Utricularia gibba HOM05D000688 ORTHO05D004737 2.8e-20 102.8 67 74.6
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 3.7e-20 102.4 67 74.6
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 4.8e-20 102.1 67 73.1
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 6.3e-20 101.7 67 73.1
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 6.3e-20 101.7 67 73.1
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 6.3e-20 101.7 67 73.1
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 8.2e-20 101.3 67 73.1
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 8.2e-20 101.3 90 57.8
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 1.1e-19 100.9 69 72.5
Sabra18G0021700 Salix brachista HOM05D000688 ORTHO05D004737 1.8e-19 100.1 67 70.1
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 2.4e-19 99.8 67 71.6
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 2.4e-19 99.8 67 71.6
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 2.4e-19 99.8 67 73.1
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 3.1e-19 99.4 91 57.1
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 3.1e-19 99.4 67 70.1
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 3.1e-19 99.4 67 71.6
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 4.1e-19 99.0 67 71.6
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 4.1e-19 99.0 67 71.6
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 4.1e-19 99.0 67 71.6
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 6.9e-19 98.2 67 74.6
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 6.9e-19 98.2 67 70.1
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 9.1e-19 97.8 67 70.1
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.2e-18 97.4 67 67.2
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 1.5e-18 97.1 66 71.2
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 1.5e-18 97.1 67 70.1
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 1.5e-18 97.1 66 71.2
RcHm_v2.0_Chr5g0042221 Rosa chinensis HOM05D000688 ORTHO05D012820 1.5e-18 97.1 66 66.7
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 1.5e-18 97.1 66 71.2
Aqoxy5G02323 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 2.0e-18 96.7 67 68.7
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 2.0e-18 96.7 66 71.2
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 2.6e-18 96.3 67 68.7
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 2.6e-18 96.3 67 68.7
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 3.4e-18 95.9 66 69.7
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 4.5e-18 95.5 74 64.9
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 4.5e-18 95.5 74 64.9
CDE08G0368 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 4.5e-18 95.5 67 71.6
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 4.5e-18 95.5 66 71.2
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 5.9e-18 95.1 65 67.7
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 5.9e-18 95.1 66 71.2
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 1.0e-17 94.4 66 69.7
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 1.3e-17 94.0 56 80.4
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 1.3e-17 94.0 67 67.2
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 1.3e-17 94.0 67 67.2
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 1.7e-17 93.6 56 80.4
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 2.9e-17 92.8 67 65.7
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 3.8e-17 92.4 70 61.4
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 3.8e-17 92.4 67 64.2
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 5.0e-17 92.0 66 68.2
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 5.0e-17 92.0 67 65.7
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 5.0e-17 92.0 67 65.7
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 6.5e-17 91.7 66 68.2
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 6.5e-17 91.7 67 64.2
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 8.5e-17 91.3 56 76.8
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 8.5e-17 91.3 68 64.7
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 8.5e-17 91.3 56 76.8
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 1.1e-16 90.9 67 65.7
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 1.1e-16 90.9 74 60.8
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 1.4e-16 90.5 67 64.2
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 1.9e-16 90.1 66 60.6
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 1.9e-16 90.1 66 68.2
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.5e-16 89.7 55 80.0
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.5e-16 89.7 55 80.0
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.5e-16 89.7 55 80.0
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 2.5e-16 89.7 67 64.2
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 2.5e-16 89.7 67 64.2
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 3.2e-16 89.4 55 78.2
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 3.2e-16 89.4 67 62.7
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 3.2e-16 89.4 67 62.7
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 3.2e-16 89.4 67 62.7
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 3.2e-16 89.4 67 62.7
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 3.2e-16 89.4 67 62.7
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 3.2e-16 89.4 67 62.7
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 4.2e-16 89.0 55 78.2
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 4.2e-16 89.0 55 76.4
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 4.2e-16 89.0 55 76.4
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 5.5e-16 88.6 67 64.2
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 5.5e-16 88.6 55 74.5
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 5.5e-16 88.6 55 78.2
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 5.5e-16 88.6 55 78.2
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 7.2e-16 88.2 55 74.5
AL3G38680 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 7.2e-16 88.2 67 64.2
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 7.2e-16 88.2 67 64.2
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 7.2e-16 88.2 67 62.7
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 7.2e-16 88.2 67 62.7
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 7.2e-16 88.2 67 62.7
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 9.4e-16 87.8 74 59.5
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 9.4e-16 87.8 74 59.5
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 9.4e-16 87.8 74 59.5
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 9.4e-16 87.8 55 78.2
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 1.2e-15 87.4 55 74.5
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 1.6e-15 87.0 67 62.7
Zm00001eb415030 Zea mays HOM05D000688 ORTHO05D004737 2.1e-15 86.7 69 59.4
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 4.7e-15 85.5 55 72.7
ATR0564G243 Amborella trichopoda HOM05D000688 ORTHO05D004737 6.1e-15 85.1 66 62.1
BcaC05g28676 Brassica carinata HOM05D000688 ORTHO05D004737 6.1e-15 85.1 74 56.8
BolC5t33527H Brassica oleracea HOM05D000688 ORTHO05D004737 6.1e-15 85.1 74 56.8
Nitab4.5_0014402g0010 Nicotiana tabacum HOM05D014113 ORTHO05D012820 7.9e-15 84.7 164 39.0
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.4e-14 84.0 67 59.7
BolC5t33519H Brassica oleracea HOM05D000688 ORTHO05D012820 1.8e-14 83.6 56 69.6
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 2.3e-14 83.2 55 70.9
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 2.3e-14 83.2 55 70.9
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 2.3e-14 83.2 55 70.9
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 3.9e-14 82.4 55 72.7
BolC5t33550H Brassica oleracea HOM05D000688 ORTHO05D012820 8.8e-14 81.3 56 67.9
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 8.8e-14 81.3 55 72.7
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 4.4e-13 79.0 55 67.3
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 4.4e-13 79.0 55 67.3
Os08g0171600 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 7.4e-13 78.2 71 52.1
ECA238G0018 Erigeron canadensis HOM05D000688 ORTHO05D004737 1.7e-12 77.0 55 65.5
Nitab4.5_0001583g0080 Nicotiana tabacum HOM05D000688 ORTHO05D012820 4.8e-12 75.5 40 87.5
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 4.1e-11 72.4 55 65.5
SEGI_35893 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 5.3e-11 72.0 75 48.0
Nitab4.5_0004881g0090 Nicotiana tabacum HOM05D000688 ORTHO05D012820 2.6e-10 69.7 57 63.2
SEGI_32927 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 2.6e-10 69.7 75 46.7
SEGI_08147 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 5.0e-09 65.5 75 45.3
Potri.006G263900 Populus trichocarpa HOM05D000688 ORTHO05D004737 5.5e-08 62.0 37 73.0
Nitab4.5_0010875g0010 Nicotiana tabacum HOM05D014113 ORTHO05D285585 2.1e-07 60.1 38 84.2
Mapoly0058s0108 Marchantia polymorpha HOM05D000688 ORTHO05D004737 8.8e-06 54.7 75 40.0


User provided reference genes

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