Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003852g0040 Nicotiana tabacum HOM05D003409 ORTHO05D004015 9.0e-113 410.2 200 100.0
Solyc07g052110.4 Solanum lycopersicum HOM05D003409 ORTHO05D004015 5.3e-65 251.5 149 87.2
Sopen07g025740 Solanum pennellii HOM05D003409 ORTHO05D004015 5.3e-65 251.5 149 87.2
Nitab4.5_0000160g0180 Nicotiana tabacum HOM05D003409 ORTHO05D004015 7.0e-65 251.1 149 86.6
Nitab4.5_0002789g0050 Nicotiana tabacum HOM05D003409 ORTHO05D004015 7.0e-65 251.1 149 86.6
CAN.G424.40 Capsicum annuum HOM05D003409 ORTHO05D004015 1.6e-64 250.0 149 85.9
PGSC0003DMG400022346 Solanum tuberosum HOM05D003409 ORTHO05D004015 2.0e-64 249.6 149 85.9
Sopen02g024220 Solanum pennellii HOM05D003409 ORTHO05D004015 2.6e-64 249.2 149 85.2
Peaxi162Scf00057g02234 Petunia axillaris HOM05D003409 ORTHO05D004015 1.0e-63 247.3 149 85.2
Solyc02g079415.1 Solanum lycopersicum HOM05D003409 ORTHO05D004015 2.2e-63 246.1 149 83.9
Actinidia35412 Actinidia chinensis HOM05D003409 ORTHO05D004015 4.7e-61 238.4 149 81.9
Oeu039418.1 Olea europaea HOM05D003409 ORTHO05D004015 4.7e-61 238.4 149 81.2
Oeu005478.2 Olea europaea HOM05D003409 ORTHO05D004015 1.8e-60 236.5 149 80.5
CSS0010821 Camellia sinensis var. sinensis HOM05D003409 ORTHO05D004015 4.0e-60 235.3 149 80.5
Dinv10352 Davidia involucrata HOM05D003409 ORTHO05D004015 5.2e-60 235.0 149 79.9
SGA_v2.0_scaffold1G00379 Striga asiatica HOM05D003409 ORTHO05D004015 5.7e-59 231.5 149 77.9
vmacro15782 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 9.7e-59 230.7 149 78.5
Hma1.2p1_1804F.1_g303050 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 1.3e-58 230.3 149 78.5
Rhsim06G0084600 Rhododendron simsii HOM05D003409 ORTHO05D004015 1.3e-58 230.3 149 77.9
Lj1A892G90 Lonicera japonica HOM05D003409 ORTHO05D004015 1.7e-58 229.9 147 78.9
unitig_578.g16234 Utricularia gibba HOM05D003409 ORTHO05D004015 1.7e-58 229.9 149 77.2
MBI14_g18948_MAGBIO Magnolia biondii HOM05D003409 ORTHO05D004015 2.2e-58 229.6 149 77.2
SalBow5G1153 Salvia bowleyana HOM05D003409 ORTHO05D004015 2.2e-58 229.6 149 77.9
TAR383G0304 Trochodendron aralioides HOM05D003409 ORTHO05D004015 2.2e-58 229.6 147 78.9
vmacro11609 Vaccinium macrocarpon HOM05D003409 ORTHO05D004015 2.8e-58 229.2 149 77.2
ClCG09G021450 Citrullus lanatus HOM05D003409 ORTHO05D004015 4.8e-58 228.4 149 73.8
PGR083G1781 Punica granatum HOM05D003409 ORTHO05D004015 4.8e-58 228.4 149 77.9
MELO3C024955.2 Cucumis melo HOM05D003409 ORTHO05D004015 6.3e-58 228.0 149 73.8
CsaV3_7G011550 Cucumis sativus L. HOM05D003409 ORTHO05D004015 6.3e-58 228.0 149 73.8
Ciclev10007740m.g Citrus clementina HOM05D003409 ORTHO05D004015 8.2e-58 227.6 149 79.2
HanXRQChr11g0342791 Helianthus annuus HOM05D003409 ORTHO05D004015 8.2e-58 227.6 149 77.2
THA.LOC104817712 Tarenaya hassleriana HOM05D003409 ORTHO05D004015 8.2e-58 227.6 149 77.9
TWI39G0812 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 8.2e-58 227.6 149 77.9
Cc04_g00350 Coffea canephora HOM05D003409 ORTHO05D004015 1.4e-57 226.9 149 77.2
Migut.H01746 Erythranthe guttata HOM05D003409 ORTHO05D004015 1.8e-57 226.5 149 75.8
Atru.chr2.3736 Acer truncatum HOM05D003409 ORTHO05D004015 2.4e-57 226.1 149 77.9
Atru.chr2.3741 Acer truncatum HOM05D003409 ORTHO05D004015 2.4e-57 226.1 149 77.9
FAN22G0308 Fragaria x ananassa HOM05D003409 ORTHO05D004015 2.4e-57 226.1 147 77.6
FAN07G2833 Fragaria x ananassa HOM05D003409 ORTHO05D004015 3.1e-57 225.7 147 76.9
Phvul.006G059200 Phaseolus vulgaris HOM05D003409 ORTHO05D004015 3.1e-57 225.7 149 76.5
VMungo0540G1920 Vigna mungo HOM05D003409 ORTHO05D004015 4.1e-57 225.3 149 76.5
FAN12G1033 Fragaria x ananassa HOM05D003409 ORTHO05D004015 5.3e-57 224.9 147 76.9
FAN12G3679 Fragaria x ananassa HOM05D003409 ORTHO05D004015 5.3e-57 224.9 147 76.9
Rhsim10G0056000 Rhododendron simsii HOM05D003409 ORTHO05D004015 5.3e-57 224.9 147 76.9
Sed0016663 Sechium edule HOM05D003409 ORTHO05D004015 5.3e-57 224.9 149 75.2
Aa31LG5G11970 Aethionema arabicum HOM05D003409 ORTHO05D004015 7.0e-57 224.6 149 75.8
COL.COLO4_07725 Corchorus olitorius HOM05D003409 ORTHO05D004015 7.0e-57 224.6 149 75.8
Gorai.002G102200 Gossypium raimondii HOM05D003409 ORTHO05D004015 7.0e-57 224.6 149 75.8
Aa31LG3G11830 Aethionema arabicum HOM05D003409 ORTHO05D004015 9.1e-57 224.2 147 76.9
Lalb_Chr15g0082251 Lupinus albus HOM05D003409 ORTHO05D004015 9.1e-57 224.2 147 76.9
TWI38G2383 Tripterygium wilfordii HOM05D003409 ORTHO05D004015 9.1e-57 224.2 149 76.5
RcHm_v2.0_Chr4g0408681 Rosa chinensis HOM05D003409 ORTHO05D004015 1.2e-56 223.8 147 76.2
FAN17G0359 Fragaria x ananassa HOM05D003409 ORTHO05D004015 1.6e-56 223.4 147 76.2
Aqoxy1G01862 Aquilegia oxysepala HOM05D003409 ORTHO05D004015 2.0e-56 223.0 147 76.2
Cpa.g.sc12.127 Carica papaya HOM05D003409 ORTHO05D004015 2.0e-56 223.0 149 75.8
CDE07G1104 Ceratophyllum demersum HOM05D003409 ORTHO05D004015 2.0e-56 223.0 149 75.8
Lsat_1_v5_gn_2_49000 Lactuca sativa HOM05D003409 ORTHO05D004015 2.0e-56 223.0 149 75.8
Manes.11G044000 Manihot esculenta HOM05D003409 ORTHO05D004015 2.0e-56 223.0 149 76.5
Duzib213G0349 Durio zibethinus HOM05D003409 ORTHO05D004015 2.7e-56 222.6 149 75.2
Glyma.08G332000 Glycine max HOM05D003409 ORTHO05D004015 2.7e-56 222.6 147 76.2
Glyma.18G075000 Glycine max HOM05D003409 ORTHO05D004015 2.7e-56 222.6 147 76.9
Gohir.D01G077700 Gossypium hirsutum HOM05D003409 ORTHO05D004015 2.7e-56 222.6 149 75.2
Gorai.013G151300 Gossypium raimondii HOM05D003409 ORTHO05D004015 3.5e-56 222.2 149 75.2
FvH4_4g11570 Fragaria vesca HOM05D003409 ORTHO05D004015 4.5e-56 221.9 147 76.2
FAN17G1343 Fragaria x ananassa HOM05D003409 ORTHO05D004015 5.9e-56 221.5 147 75.5
Gohir.A01G093200 Gossypium hirsutum HOM05D003409 ORTHO05D004015 5.9e-56 221.5 149 75.2
Lalb_Chr20g0114091 Lupinus albus HOM05D003409 ORTHO05D004015 5.9e-56 221.5 147 76.2
Lsat_1_v5_gn_1_7960 Lactuca sativa HOM05D003409 ORTHO05D004015 7.7e-56 221.1 149 75.2
Potri.001G369600 Populus trichocarpa HOM05D003409 ORTHO05D004015 1.0e-55 220.7 149 74.5
Thecc.07G009800 Theobroma cacao HOM05D003409 ORTHO05D004015 1.0e-55 220.7 149 74.5
Lj6g0020357 Lotus japonicus HOM05D003409 ORTHO05D004015 1.3e-55 220.3 147 76.2
PSO210G2179 Papaver somniferum HOM05D003409 ORTHO05D004015 1.3e-55 220.3 147 76.2
PSO210G5345 Papaver somniferum HOM05D003409 ORTHO05D004015 1.3e-55 220.3 147 76.2
PSO478G4279 Papaver somniferum HOM05D003409 ORTHO05D004015 1.3e-55 220.3 147 76.2
BcaNung02400 Brassica carinata HOM05D003409 ORTHO05D004015 2.2e-55 219.5 147 76.2
Psat5g165320 Pisum sativum HOM05D003409 ORTHO05D004015 2.2e-55 219.5 147 75.5
AL7G26290 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 2.9e-55 219.2 147 75.5
Carub.0007s1427 Capsella rubella HOM05D003409 ORTHO05D004015 2.9e-55 219.2 147 75.5
Eucgr.F02036 Eucalyptus grandis HOM05D003409 ORTHO05D004015 5.0e-55 218.4 149 73.2
TPR.G17957 Trifolium pratense HOM05D003409 ORTHO05D004015 6.5e-55 218.0 147 74.1
BcaC09g50636 Brassica carinata HOM05D003409 ORTHO05D004015 1.1e-54 217.2 147 75.5
A01p17840 Brassica napus HOM05D003409 ORTHO05D004015 1.1e-54 217.2 147 75.5
C01p22640 Brassica napus HOM05D003409 ORTHO05D004015 1.1e-54 217.2 147 75.5
BolC1t02194H Brassica oleracea HOM05D003409 ORTHO05D004015 1.1e-54 217.2 147 75.5
BraA01t01740Z Brassica rapa HOM05D003409 ORTHO05D004015 1.1e-54 217.2 147 75.5
Eucgr.C03787 Eucalyptus grandis HOM05D003409 ORTHO05D004015 1.1e-54 217.2 149 72.5
Carub.0008s1625 Capsella rubella HOM05D003409 ORTHO05D004015 1.5e-54 216.9 149 75.2
Nn4g24629 Nelumbo nucifera HOM05D003409 ORTHO05D004015 1.5e-54 216.9 147 75.5
ECA248G0890 Erigeron canadensis HOM05D003409 ORTHO05D004015 1.9e-54 216.5 147 74.8
CiPaw.11G205600 Carya illinoinensis HOM05D003409 ORTHO05D004015 2.5e-54 216.1 149 71.8
Prupe.8G036800 Prunus persica HOM05D003409 ORTHO05D004015 2.5e-54 216.1 149 74.5
Gohir.A13G131500 Gossypium hirsutum HOM05D003409 ORTHO05D004015 3.2e-54 215.7 144 76.4
AT5G55920 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 7.2e-54 214.5 147 74.8
arahy.Tifrunner.gnm1.ann1.K9VFVK Arachis hypogaea HOM05D003409 ORTHO05D004015 9.4e-54 214.2 167 68.3
Sp7g24560 Schrenkiella parvula HOM05D003409 ORTHO05D004015 9.4e-54 214.2 147 74.1
AT4G26600 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 1.2e-53 213.8 147 73.5
CARHR234180 Cardamine hirsuta HOM05D003409 ORTHO05D004015 1.2e-53 213.8 149 72.5
Cfa016917 Carpinus fangiana HOM05D003409 ORTHO05D004015 1.6e-53 213.4 149 71.1
MD04G1044800 Malus domestica HOM05D003409 ORTHO05D004015 1.6e-53 213.4 149 73.2
ATR0751G119 Amborella trichopoda HOM05D003409 ORTHO05D004015 2.1e-53 213.0 149 71.8
AL8G31480 Arabidopsis lyrata HOM05D003409 ORTHO05D004015 2.1e-53 213.0 147 73.5
HPP92_010888 Vanilla planifolia HOM05D003409 ORTHO05D004015 2.7e-53 212.6 149 69.8
HPP92_010890 Vanilla planifolia HOM05D003409 ORTHO05D004015 2.7e-53 212.6 149 69.8
Medtr3g460700 Medicago truncatula HOM05D003409 ORTHO05D004015 3.6e-53 212.2 147 72.8
QL08p003492 Quercus lobata HOM05D003409 ORTHO05D004015 4.7e-53 211.8 149 73.2
Thhalv10024758m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 8.0e-53 211.1 149 73.2
CANSAT11G2129 Cannabis sativa HOM05D003409 ORTHO05D004015 2.3e-52 209.5 149 70.5
AagrBONN_evm.TU.Sc2ySwM_117.3404 Anthoceros agrestis HOM05D003409 ORTHO05D004015 4.0e-52 208.8 149 67.8
CARHR269290 Cardamine hirsuta HOM05D003409 ORTHO05D004015 6.8e-52 208.0 147 72.8
Thhalv10012859m.g Eutrema salsugineum HOM05D003409 ORTHO05D004015 2.6e-51 206.1 147 72.8
SEGI_08867 Sequoiadendron giganteum HOM05D003409 ORTHO05D004015 2.6e-51 206.1 149 69.8
Sabra16G0242500 Salix brachista HOM05D003409 ORTHO05D004015 3.4e-51 205.7 182 61.0
Sc03g0011610 Simmondsia chinensis HOM05D003409 ORTHO05D004015 1.7e-50 203.4 147 69.4
Hund01870 Selenicereus undatus HOM05D003409 ORTHO05D004015 2.2e-50 203.0 149 69.1
Pp3c1_15210 Physcomitrium patens HOM05D003409 ORTHO05D004015 2.8e-50 202.6 147 67.3
EL10Ac4g07529 Beta vulgaris HOM05D003409 ORTHO05D004015 3.7e-50 202.2 149 69.8
Zm00001eb189070 Zea mays HOM05D003409 ORTHO05D004015 3.7e-50 202.2 149 65.8
Sp6g17770 Schrenkiella parvula HOM05D003409 ORTHO05D004015 6.3e-50 201.4 147 70.7
Hund01871 Selenicereus undatus HOM05D003409 ORTHO05D004015 1.1e-49 200.7 149 68.5
Zm00001eb253180 Zea mays HOM05D003409 ORTHO05D004015 1.1e-49 200.7 149 65.8
Os09g0551300 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 1.4e-49 200.3 149 65.1
BcaB05g22238 Brassica carinata HOM05D003409 ORTHO05D004015 1.8e-49 199.9 147 70.1
Os02g0724600 Oryza sativa ssp. japonica HOM05D003409 ORTHO05D004015 1.8e-49 199.9 149 64.4
A02p09450 Brassica napus HOM05D003409 ORTHO05D004015 4.1e-49 198.7 147 69.4
C02p15740 Brassica napus HOM05D003409 ORTHO05D004015 4.1e-49 198.7 147 69.4
BraA02t06009Z Brassica rapa HOM05D003409 ORTHO05D004015 4.1e-49 198.7 147 69.4
Mapoly0034s0108 Marchantia polymorpha HOM05D003409 ORTHO05D004015 4.1e-49 198.7 147 68.0
BolC2t07681H Brassica oleracea HOM05D003409 ORTHO05D004015 5.4e-49 198.4 147 68.7
CBR_g8798 Chara braunii HOM05D003409 ORTHO05D004015 9.1e-49 197.6 149 64.4
AUR62035665 Chenopodium quinoa HOM05D003409 ORTHO05D004015 1.2e-48 197.2 149 66.4
Ca_12445_v3 Cicer arietinum L. HOM05D003409 ORTHO05D004015 1.2e-48 197.2 190 57.9
BcaB08g35958 Brassica carinata HOM05D003409 ORTHO05D004015 1.6e-48 196.8 149 68.5
BcaC04g20188 Brassica carinata HOM05D003409 ORTHO05D004015 1.6e-48 196.8 149 68.5
C09p46870 Brassica napus HOM05D003409 ORTHO05D004015 1.6e-48 196.8 149 68.5
BolC9t57537H Brassica oleracea HOM05D003409 ORTHO05D004015 1.6e-48 196.8 149 68.5
SMO367G0604 Selaginella moellendorffii HOM05D003409 ORTHO05D004015 2.7e-48 196.1 149 63.8
BraA10t43407Z Brassica rapa HOM05D003409 ORTHO05D004015 4.5e-48 195.3 149 67.8
AUR62017142 Chenopodium quinoa HOM05D003409 ORTHO05D004015 5.9e-48 194.9 149 66.4
PRCOL_00002474 Prasinoderma coloniale HOM05D003409 ORTHO05D004015 5.9e-48 194.9 163 60.7
GSVIVG01014718001 Vitis vinifera HOM05D003409 ORTHO05D004015 2.9e-47 192.6 127 75.6
Cre06.g273413 Chlamydomonas reinhardtii HOM05D003409 ORTHO05D004015 4.7e-45 185.3 153 57.5
Hma1.2p1_1804F.1_g303060 Hydrangea macrophylla HOM05D003409 ORTHO05D004015 4.7e-45 185.3 159 66.0
MCO14G316 Micromonas commoda HOM05D003409 ORTHO05D004015 2.3e-44 183.0 147 63.3
FAN04G1394 Fragaria x ananassa HOM05D003409 ORTHO05D004015 6.8e-44 181.4 147 64.6
Haze_09846 Corylus avellana HOM05D003409 ORTHO05D004015 3.7e-42 175.6 149 61.7
SGA_v2.0_scaffold42G15966 Striga asiatica HOM05D003409 ORTHO05D004015 1.8e-41 173.3 120 73.3
A10p13110 Brassica napus HOM05D003409 ORTHO05D004015 1.2e-40 170.6 149 62.4
DCAR_017071 Daucus carota HOM05D003409 ORTHO05D004015 1.0e-39 167.5 115 76.5
arahy.Tifrunner.gnm1.ann1.PKXG4Q Arachis hypogaea HOM05D003409 ORTHO05D004015 1.2e-37 160.6 219 47.5
Dinv40878 Davidia involucrata HOM05D003409 ORTHO05D004015 2.6e-35 152.9 108 74.1
Cfa025549 Carpinus fangiana HOM05D003409 ORTHO05D004015 4.6e-32 142.1 149 53.0
CiPaw.12G139700 Carya illinoinensis HOM05D003409 ORTHO05D004015 1.7e-18 97.1 113 49.6
Lsat_1_v5_gn_0_44241 Lactuca sativa HOM05D003409 ORTHO05D004015 2.5e-14 83.2 112 46.4
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 2.8e-13 79.7 84 54.8
Lsat_1_v5_gn_0_17681 Lactuca sativa HOM05D003409 ORTHO05D004015 1.1e-12 77.8 82 56.1
Lsat_1_v5_gn_8_95780 Lactuca sativa HOM05D003409 ORTHO05D004015 8.9e-12 74.7 82 53.7
Gohir.D13G135000 Gossypium hirsutum HOM05D003409 ORTHO05D004015 2.0e-11 73.6 36 91.7
SalBow1G0483 Salvia bowleyana HOM05D003409 ORTHO05D004015 4.1e-09 65.9 149 34.2
Actinidia37140 Actinidia chinensis HOM05D003409 ORTHO05D004015 1.7e-07 60.5 30 90.0
Pp3c27_2290 Physcomitrium patens HOM05D001724 ORTHO05D007284 3.0e-07 59.7 135 31.9
AT4G17590 Arabidopsis thaliana HOM05D003409 ORTHO05D004015 5.1e-07 58.9 102 41.2
HPP92_023436 Vanilla planifolia HOM05D005309 ORTHO05D006648 5.1e-07 58.9 142 31.7
CiPaw.12G139600 Carya illinoinensis HOM05D003409 ORTHO05D004015 8.7e-07 58.2 33 75.8
Lsat_1_v5_gn_4_124240 Lactuca sativa HOM05D003409 ORTHO05D004015 8.7e-07 58.2 88 42.0
COL.COLO4_08888 Corchorus olitorius HOM05D005309 ORTHO05D006648 1.1e-06 57.8 178 29.8
Glyma.02G301000 Glycine max HOM05D001724 ORTHO05D007284 1.9e-06 57.0 141 31.9
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 3.3e-06 56.2 155 29.0
TAR627G0108 Trochodendron aralioides HOM05D005309 ORTHO05D006648 3.3e-06 56.2 175 28.6
CANSAT64G0469 Cannabis sativa HOM05D005309 ORTHO05D006648 5.6e-06 55.5 149 31.5
LjContig00081g0019548 Lotus japonicus HOM05D001724 ORTHO05D007284 5.6e-06 55.5 142 31.7
Sabra16G0241600 Salix brachista HOM05D001724 ORTHO05D007284 5.6e-06 55.5 145 31.0
CANSAT11G0717 Cannabis sativa HOM05D001724 ORTHO05D007284 7.3e-06 55.1 130 33.1
Thhalv10020504m.g Eutrema salsugineum HOM05D001724 ORTHO05D007284 7.3e-06 55.1 164 29.9
FAN05G5670 Fragaria x ananassa HOM05D005309 ORTHO05D006648 7.3e-06 55.1 145 30.3
Manes.15G059300 Manihot esculenta HOM05D001724 ORTHO05D007284 9.6e-06 54.7 141 29.8
Nn3g20733 Nelumbo nucifera HOM05D005309 ORTHO05D006648 9.6e-06 54.7 142 28.9
SMO133G0033 Selaginella moellendorffii HOM05D001724 ORTHO05D007284 9.6e-06 54.7 141 29.8


User provided reference genes

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