Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.5e-181 638.6 326 100.0
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.9e-176 622.5 326 97.9
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 3.3e-157 558.5 326 86.5
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 7.4e-157 557.4 326 85.9
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 1.3e-156 556.6 326 86.2
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 6.3e-156 554.3 326 86.8
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 5.9e-146 521.2 323 83.6
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 9.1e-131 470.7 330 74.5
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.5e-130 468.4 327 74.0
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.5e-130 468.4 328 72.6
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 1.3e-129 466.8 328 72.6
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 1.7e-129 466.5 328 73.5
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.9e-129 465.7 327 74.0
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.1e-128 463.8 329 72.0
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 1.5e-128 463.4 328 73.5
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 3.2e-128 462.2 331 71.6
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 4.0e-126 455.3 326 71.8
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 6.8e-126 454.5 322 73.9
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 2.0e-125 453.0 327 69.1
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 4.4e-125 451.8 293 77.8
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 4.4e-125 451.8 327 69.1
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 7.5e-125 451.1 345 69.6
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 7.5e-125 451.1 329 71.7
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.3e-124 450.3 328 72.6
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 1.3e-124 450.3 324 71.9
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 2.2e-124 449.5 327 70.3
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 2.2e-124 449.5 324 71.0
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 2.2e-124 449.5 330 69.1
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 2.8e-124 449.1 329 70.5
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.7e-124 448.7 327 70.3
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 1.4e-123 446.8 326 69.3
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 1.4e-123 446.8 359 66.6
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.8e-123 446.4 349 69.1
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 1.8e-123 446.4 329 68.7
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.4e-123 446.0 326 70.6
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 3.1e-123 445.7 326 68.7
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 4.1e-123 445.3 327 69.7
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 4.1e-123 445.3 330 71.5
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 4.1e-123 445.3 329 69.6
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 4.1e-123 445.3 331 71.0
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 5.4e-123 444.9 327 69.1
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.2e-122 443.7 326 69.9
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.2e-122 443.7 326 67.8
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 3.5e-122 442.2 331 67.7
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.0e-121 440.7 329 67.8
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.0e-121 440.7 329 69.3
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 1.3e-121 440.3 327 69.4
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.7e-121 439.9 329 69.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 5.0e-121 438.3 329 70.2
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 8.6e-121 437.6 329 70.5
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 8.6e-121 437.6 327 67.6
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 1.9e-120 436.4 323 71.5
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.5e-120 436.0 331 67.7
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 3.2e-120 435.6 329 69.3
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 3.2e-120 435.6 367 64.6
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 7.2e-120 434.5 328 66.8
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.2e-119 433.7 332 66.9
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.1e-119 433.0 329 69.0
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 2.8e-119 432.6 332 66.0
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 3.6e-119 432.2 327 68.5
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 6.1e-119 431.4 327 68.2
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.0e-118 430.6 328 65.2
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 5.2e-118 428.3 326 65.6
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.8e-118 427.9 326 65.3
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 6.8e-118 427.9 326 66.3
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.2e-117 427.2 326 65.0
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 4.4e-117 425.2 327 68.5
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 5.7e-117 424.9 331 65.9
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 3.7e-116 422.2 328 67.7
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 1.4e-115 420.2 325 67.1
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 4.1e-115 418.7 322 66.8
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 5.4e-115 418.3 328 65.2
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 7.0e-115 417.9 326 65.6
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 7.0e-115 417.9 326 65.6
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 9.2e-115 417.5 325 65.2
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.0e-114 416.4 326 65.3
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 2.0e-114 416.4 326 68.1
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 2.7e-114 416.0 328 66.2
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 3.5e-114 415.6 325 65.2
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 3.5e-114 415.6 328 64.6
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 2.9e-113 412.5 327 64.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 3.8e-113 412.1 327 64.2
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 5.0e-113 411.8 327 65.4
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 5.0e-113 411.8 325 64.3
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 6.6e-113 411.4 325 64.9
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.6e-113 411.4 325 64.3
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 8.6e-113 411.0 325 64.3
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 5.6e-112 408.3 325 64.0
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 7.3e-112 407.9 327 65.1
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 7.3e-112 407.9 399 57.1
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 1.2e-111 407.1 326 64.4
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 1.6e-111 406.8 276 75.0
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 5.2e-110 401.7 326 61.0
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 2.0e-109 399.8 326 64.4
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 7.5e-109 397.9 336 60.1
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.7e-108 395.6 325 61.5
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 1.1e-107 394.0 324 61.7
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.6e-106 390.2 316 64.2
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.9e-105 385.6 325 60.0
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.5e-104 383.6 271 73.1
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 2.5e-104 382.9 326 62.9
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 1.1e-102 377.5 324 61.7
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 2.9e-100 369.4 326 58.3
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.0e-97 360.9 324 59.3
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 3.9e-97 359.0 331 57.7
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 1.8e-94 350.1 327 57.2
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 2.8e-87 326.2 326 54.9
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 3.1e-86 322.8 327 53.8
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 5.8e-85 318.5 323 54.8
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.1e-83 314.3 322 54.7
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 3.2e-83 312.8 320 52.8
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 9.2e-83 311.2 315 52.4
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.6e-82 310.5 326 56.7
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 2.5e-80 303.1 320 50.6
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 9.6e-80 301.2 275 58.5
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 3.6e-79 299.3 315 52.1
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 4.2e-75 285.8 323 48.6
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 8.7e-73 278.1 177 80.2
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.2e-69 267.7 197 69.5
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.4e-62 243.4 195 63.6
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 2.4e-62 243.4 323 45.2
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 4.0e-62 242.7 214 58.9
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 1.3e-60 237.7 285 43.5
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 7.9e-58 228.4 186 62.9
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.3e-55 221.1 155 70.3
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.3e-55 221.1 276 47.8
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 3.4e-53 213.0 286 41.3
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.9e-52 209.1 180 63.3
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.2e-51 206.5 323 40.9
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 9.3e-51 204.9 143 69.9
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 7.9e-50 201.8 181 57.5
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 2.5e-48 196.8 133 72.9
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 6.9e-46 188.7 131 70.2
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 5.0e-44 182.6 144 63.2
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 2.1e-42 177.2 265 38.1
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.4e-41 174.5 131 68.7
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 4.3e-40 169.5 97 78.4
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.1e-38 164.9 235 40.4
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 1.1e-38 164.9 128 68.0
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 3.1e-38 163.3 280 37.9
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 9.1e-38 161.8 144 58.3
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.3e-36 157.9 114 68.4
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.9e-35 154.1 140 57.9
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.7e-32 142.5 153 47.1
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 1.7e-31 141.0 196 38.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 1.4e-30 137.9 177 42.9
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 7.0e-30 135.6 142 48.6
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.9e-28 130.2 127 49.6
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.9e-27 127.5 82 69.5
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.1e-26 124.0 145 46.2
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 1.4e-25 121.3 126 50.0
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.0e-20 105.1 117 48.7
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 4.2e-19 99.8 195 38.5
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 2.1e-18 97.4 68 73.5
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 2.5e-11 73.9 78 53.8
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 2.5e-11 73.9 78 53.8
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 2.7e-10 70.5 77 51.9
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 6.3e-07 59.3 119 39.5
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 2.4e-06 57.4 33 78.8
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 9.1e-06 55.5 61 54.1


User provided reference genes

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